Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7oi8:0 (3.5) BS01 rna ? GO:0003723 ... Q9BYC8 34315873
    2 7oi8:0 (3.5) BS02 ZN ? GO:0003723 ... Q9BYC8 34315873
    3 7oi8:1 (3.5) BS01 rna ? GO:0003735 ... O75394 34315873
    4 7oi8:2 (3.5) BS01 rna ? GO:0003735 ... Q9BQ48 34315873
    5 7oi8:3 (3.5) BS01 rna ? GO:0003735 ... Q9NZE8 34315873
    6 7oi8:5 (3.5) BS01 rna ? GO:0003723 ... Q9BZE1 34315873
    7 7oi8:6 (3.5) BS01 rna ? GO:0005515 ... Q96DV4 34315873
    8 7oi8:6 (3.5) BS02 rna ? GO:0005515 ... Q96DV4 34315873
    9 7oi8:8 (3.5) BS01 rna ? GO:0003723 ... Q9NQ50 34315873
    10 7oi8:9 (3.5) BS01 rna ? GO:0003723 ... Q8IXM3 34315873
    11 7oi8:D (3.5) BS01 rna ? GO:0003723 ... Q5T653 34315873
    12 7oi8:E (3.5) BS01 rna ? GO:0003723 ... P09001 34315873
    13 7oi8:F (3.5) BS01 rna ? GO:0003723 ... Q9BYD3 34315873
    14 7oi8:H (3.5) BS01 rna ? GO:0003723 ... Q9BYD2 34315873
    15 7oi8:I (3.5) BS01 peptide ? GO:0003723 ... Q7Z7H8 34315873
    16 7oi8:I (3.5) BS02 rna ? GO:0003723 ... Q7Z7H8 34315873
    17 7oi8:J (3.5) BS01 rna ? GO:0003723 ... Q9Y3B7 34315873
    18 7oi8:K (3.5) BS01 rna ? GO:0003723 ... Q9BYD1 34315873
    19 7oi8:L (3.5) BS01 rna ? GO:0003723 ... Q6P1L8 34315873
    20 7oi8:M (3.5) BS01 rna ? GO:0003723 ... Q9P015 34315873
    21 7oi8:N (3.5) BS01 peptide ? GO:0003735 ... Q9NX20 34315873
    22 7oi8:N (3.5) BS02 rna ? GO:0003735 ... Q9NX20 34315873
    23 7oi8:O (3.5) BS01 rna ? GO:0003735 ... Q9NRX2 34315873
    24 7oi8:P (3.5) BS01 rna ? GO:0003723 ... Q9H0U6 34315873
    25 7oi8:P (3.5) BS02 rna ? GO:0003723 ... Q9H0U6 34315873
    26 7oi8:Q (3.5) BS01 rna ? GO:0003735 ... P49406 34315873
    27 7oi8:R (3.5) BS01 rna ? GO:0003723 ... Q9BYC9 34315873
    28 7oi8:S (3.5) BS01 rna ? GO:0003723 ... Q7Z2W9 34315873
    29 7oi8:T (3.5) BS01 rna ? GO:0003723 ... Q9NWU5 34315873
    30 7oi8:U (3.5) BS01 rna ? GO:0001650 ... Q16540 34315873
    31 7oi8:V (3.5) BS01 rna ? GO:0003723 ... Q96A35 34315873
    32 7oi8:W (3.5) BS01 rna ? GO:0003723 ... Q9P0M9 34315873
    33 7oi8:X (3.5) BS01 rna ? GO:0003723 ... Q13084 34315873
    34 7oi8:Y (3.5) BS01 rna ? GO:0003674 ... Q9HD33 34315873
    35 7oi8:Z (3.5) BS01 rna ? GO:0003735 ... Q8TCC3 34315873
    36 7oi8:a (3.5) BS01 rna ? GO:0003723 ... Q9Y6G3 34315873
    37 7oi8:b (3.5) BS01 rna ? GO:0003723 ... Q8N983 34315873
    38 7oi8:c (3.5) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 34315873
    39 7oi8:d (3.5) BS01 rna ? GO:0003723 ... Q9BRJ2 34315873
    40 7oi8:f (3.5) BS01 rna ? GO:0005515 ... Q96GC5 34315873
    41 7oi8:f (3.5) BS02 rna ? GO:0005515 ... Q96GC5 34315873
    42 7oi8:g (3.5) BS01 rna ? GO:0003735 ... Q13405 34315873
    43 7oi8:i (3.5) BS01 rna ? GO:0003735 ... Q4U2R6 34315873
    44 7oi8:j (3.5) BS01 rna ? GO:0003735 ... Q86TS9 34315873
    45 7oi8:m (3.5) BS01 rna ? GO:0003735 ... Q7Z7F7 34315873
    46 7oi8:o (3.5) BS01 rna ? GO:0003735 ... Q9BQC6 34315873
    47 7oi8:q (3.5) BS01 rna ? GO:0005515 ... Q8TAE8 34315873
    48 7oi8:q (3.5) BS02 rna ? GO:0005515 ... Q8TAE8 34315873
    49 7oi8:r (3.5) BS01 rna ? GO:0003735 ... Q9NVS2 34315873
    50 7oi8:s (3.5) BS01 rna ? GO:0003723 ... Q9NP92 34315873
    51 7oi8:u (3.5) BS01 rna ? GO:0005515 ... Q96EH3 34315873
    52 7oi8:v (3.5) BS01 PNS ? GO:0000266 ... L0R8F8 34315873
    53 7oi8:w (3.5) BS01 PNS ? GO:0000035 ... O14561 34315873
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218