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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7obq:q (3.9) BS01 rna ? GO:0003723 ... J9PAS6 34260909
    2 7obq:u (3.9) BS01 rna ? GO:0003723 ... Q00004 34260909
    3 7obq:v (3.9) BS01 MG ? GO:0005525 ... G1STG2 34260909
    4 7obq:v (3.9) BS02 GTP ? GO:0005525 ... G1STG2 34260909
    5 7obq:x (3.9) BS01 rna 3.6.5.4 GO:0003723 ... P61010 34260909
    6 7obq:x (3.9) BS02 GNP 3.6.5.4 GO:0003723 ... P61010 34260909
    7 7obq:x (3.9) BS03 MG 3.6.5.4 GO:0003723 ... P61010 34260909
    8 7obq:x (3.9) BS04 GNP 3.6.5.4 GO:0003723 ... P61010 34260909
    9 7obq:y (3.9) BS01 rna ? GO:0003924 ... A0A5F9CI80 34260909
    10 7obq:y (3.9) BS02 GNP ? GO:0003924 ... A0A5F9CI80 34260909
    11 7obq:y (3.9) BS03 GNP ? GO:0003924 ... A0A5F9CI80 34260909
    12 7obq:z (3.9) BS01 rna ? GO:0005737 ... P33731 34260909
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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