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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nhm:1 (3.1) BS01 rna ? GO:0003735 ... Q2FZ60 34117249
    2 7nhm:2 (3.1) BS01 rna ? GO:0003735 ... P66173 34117249
    3 7nhm:3 (3.1) BS01 rna ? GO:0003735 ... P0A0G2 34117249
    4 7nhm:3 (3.1) BS02 rna ? GO:0003735 ... P0A0G2 34117249
    5 7nhm:4 (3.1) BS01 rna ? GO:0003735 ... Q2FWD8 34117249
    6 7nhm:4 (3.1) BS02 rna ? GO:0003735 ... Q2FWD8 34117249
    7 7nhm:5 (3.1) BS01 rna ? GO:0003735 ... Q2FZF1 34117249
    8 7nhm:5 (3.1) BS02 ZN ? GO:0003735 ... Q2FZF1 34117249
    9 7nhm:6 (3.1) BS01 rna ? GO:0003735 ... Q2FY22 34117249
    10 7nhm:6 (3.1) BS02 ZN ? GO:0003735 ... Q2FY22 34117249
    11 7nhm:7 (3.1) BS01 rna ? GO:0003735 ... Q2FUQ0 34117249
    12 7nhm:8 (3.1) BS01 rna ? GO:0003735 ... Q2FXQ0 34117249
    13 7nhm:9 (3.1) BS01 rna ? GO:0003735 ... Q2FW29 34117249
    14 7nhm:9 (3.1) BS02 ZN ? GO:0003735 ... Q2FW29 34117249
    15 7nhm:G (3.1) BS01 rna ? GO:0002181 ... P60430 34117249
    16 7nhm:H (3.1) BS01 rna ? GO:0003735 ... Q2FW06 34117249
    17 7nhm:I (3.1) BS01 rna ? GO:0003735 ... Q2FW07 34117249
    18 7nhm:J (3.1) BS01 rna ? GO:0000049 ... Q2FW18 34117249
    19 7nhm:J (3.1) BS02 rna ? GO:0000049 ... Q2FW18 34117249
    20 7nhm:J (3.1) BS03 rna ? GO:0000049 ... Q2FW18 34117249
    21 7nhm:K (3.1) BS01 rna ? GO:0002181 ... Q2FW21 34117249
    22 7nhm:M (3.1) BS01 rna ? GO:0003729 ... Q2FW38 34117249
    23 7nhm:N (3.1) BS01 rna ? GO:0003735 ... Q2FW16 34117249
    24 7nhm:N (3.1) BS02 rna ? GO:0003735 ... Q2FW16 34117249
    25 7nhm:O (3.1) BS01 rna ? GO:0003735 ... P0A0F8 34117249
    26 7nhm:P (3.1) BS01 rna ? GO:0000049 ... Q2FW13 34117249
    27 7nhm:P (3.1) BS02 rna ? GO:0000049 ... Q2FW13 34117249
    28 7nhm:Q (3.1) BS01 rna ? GO:0003735 ... Q2FW33 34117249
    29 7nhm:R (3.1) BS01 rna ? GO:0003735 ... Q2FW22 34117249
    30 7nhm:R (3.1) BS02 rna ? GO:0003735 ... Q2FW22 34117249
    31 7nhm:S (3.1) BS01 rna ? GO:0003735 ... Q2FZ42 34117249
    32 7nhm:S (3.1) BS02 rna ? GO:0003735 ... Q2FZ42 34117249
    33 7nhm:T (3.1) BS01 rna ? GO:0000027 ... Q2FXQ1 34117249
    34 7nhm:U (3.1) BS01 rna ? GO:0003723 ... Q2FXS8 34117249
    35 7nhm:U (3.1) BS02 MG ? GO:0003723 ... Q2FXS8 34117249
    36 7nhm:V (3.1) BS01 rna ? GO:0003735 ... Q2FW11 34117249
    37 7nhm:W (3.1) BS01 rna ? GO:0000027 ... Q2FW08 34117249
    38 7nhm:X (3.1) BS01 rna ? GO:0003723 ... P60735 34117249
    39 7nhm:Y (3.1) BS01 rna ? GO:0003723 ... Q2G0S0 34117249
    40 7nhm:Z (3.1) BS01 rna ? GO:0003735 ... Q2FXT0 34117249
    41 7nhm:Z (3.1) BS02 rna ? GO:0003735 ... Q2FXT0 34117249
    42 7nhm:c (3.1) BS01 rna ? GO:0003735 ... Q2FZ25 34117249
    43 7nhm:d (3.1) BS01 rna ? GO:0003676 ... Q2FW12 34117249
    44 7nhm:e (3.1) BS01 rna ? GO:0003723 ... Q2FXK6 34117249
    45 7nhm:f (3.1) BS01 rna ? GO:0003723 ... Q2FW23 34117249
    46 7nhm:g (3.1) BS01 rna ? GO:0003735 ... Q2G113 34117249
    47 7nhm:h (3.1) BS01 rna ? GO:0000028 ... P48940 34117249
    48 7nhm:i (3.1) BS01 rna ? GO:0003735 ... Q2FW20 34117249
    49 7nhm:j (3.1) BS01 rna ? GO:0003723 ... Q2FW39 34117249
    50 7nhm:j (3.1) BS02 rna ? GO:0003723 ... Q2FW39 34117249
    51 7nhm:k (3.1) BS01 rna ? GO:0000049 ... A0A0D1JTN2 34117249
    52 7nhm:l (3.1) BS01 rna ? GO:0003735 ... Q2FW31 34117249
    53 7nhm:m (3.1) BS01 rna ? GO:0000049 ... P0A0H0 34117249
    54 7nhm:n (3.1) BS01 rna ? GO:0000049 ... Q2FW30 34117249
    55 7nhm:o (3.1) BS01 rna ? GO:0003735 ... Q2FW19 34117249
    56 7nhm:o (3.1) BS02 ZN ? GO:0003735 ... Q2FW19 34117249
    57 7nhm:p (3.1) BS01 rna ? GO:0003735 ... Q2G2Q1 34117249
    58 7nhm:p (3.1) BS02 rna ? GO:0003735 ... Q2G2Q1 34117249
    59 7nhm:q (3.1) BS01 rna ? GO:0003735 ... Q2FZ45 34117249
    60 7nhm:r (3.1) BS01 rna ? GO:0003735 ... Q2FW15 34117249
    61 7nhm:s (3.1) BS01 rna ? GO:0003735 ... Q2G111 34117249
    62 7nhm:t (3.1) BS01 rna ? GO:0000028 ... Q2FW10 34117249
    63 7nhm:u (3.1) BS01 rna ? GO:0003723 ... Q2FXY6 34117249
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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