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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7m4u:b (2.71) BS01 rna ? GO:0003735 ... A0A7U3Y808 34044590
    2 7m4u:c (2.71) BS01 rna ? GO:0003676 ... B7IA33 34044590
    3 7m4u:d (2.71) BS01 rna ? GO:0003723 ... B7IA15 34044590
    4 7m4u:e (2.71) BS01 rna ? GO:0003723 ... B7IA22 34044590
    5 7m4u:f (2.71) BS01 rna ? GO:0003735 ... B7IBC1 34044590
    6 7m4u:g (2.71) BS01 rna ? GO:0000028 ... B7I7S0 34044590
    7 7m4u:h (2.71) BS01 rna ? GO:0003735 ... B7IA25 34044590
    8 7m4u:i (2.71) BS01 rna ? GO:0003723 ... A0A7U3Y815 34044590
    9 7m4u:j (2.71) BS01 rna ? GO:0000049 ... B7IA40 34044590
    10 7m4u:k (2.71) BS01 rna ? GO:0003735 ... B7IA16 34044590
    11 7m4u:l (2.71) BS01 rna ? GO:0000049 ... B7I7R9 34044590
    12 7m4u:m (2.71) BS01 rna ? GO:0000049 ... B7IA17 34044590
    13 7m4u:n (2.71) BS01 rna ? GO:0003735 ... B7IA26 34044590
    14 7m4u:o (2.71) BS01 rna ? GO:0003735 ... B7I3U0 34044590
    15 7m4u:p (2.71) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 34044590
    16 7m4u:q (2.71) BS01 rna ? GO:0003735 ... B7IA30 34044590
    17 7m4u:r (2.71) BS01 rna ? GO:0003735 ... B7IBC2 34044590
    18 7m4u:s (2.71) BS01 rna ? GO:0000028 ... B7IA35 34044590
    19 7m4u:t (2.71) BS01 rna ? GO:0003723 ... B7I5N9 34044590
    20 7m4u:u (2.71) BS01 rna ? GO:0003735 ... B7I2K7 34044590
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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