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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7jqc:B (3.3) BS01 rna ? GO:0000028 ... G1TLT8 33188728
    2 7jqc:C (3.3) BS01 rna ? GO:0003735 ... G1SS70 33188728
    3 7jqc:D (3.3) BS01 rna ? GO:0002181 ... P15880 33188728
    4 7jqc:E (3.3) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 33188728
    5 7jqc:F (3.3) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33188728
    6 7jqc:G (3.3) BS01 rna ? GO:0000028 ... G1TFM5 33188728
    7 7jqc:G (3.3) BS02 rna ? GO:0000028 ... G1TFM5 33188728
    8 7jqc:H (3.3) BS01 rna ? GO:0003735 ... A0A5K1UJS7 33188728
    9 7jqc:I (3.3) BS01 rna ? GO:0003735 ... G1SVB0 33188728
    10 7jqc:J (3.3) BS01 rna ? GO:0000462 ... G1TJW1 33188728
    11 7jqc:K (3.3) BS01 rna ? GO:0003723 ... B7NZS8 33188728
    12 7jqc:L (3.3) BS01 rna ? GO:0003723 ... G1TPV3 33188728
    13 7jqc:M (3.3) BS01 rna ? GO:0003723 ... G1TK17 33188728
    14 7jqc:N (3.3) BS01 rna ? GO:0003735 ... G1SFR8 33188728
    15 7jqc:O (3.3) BS01 rna ? GO:0003735 ... G1TRM4 33188728
    16 7jqc:P (3.3) BS01 rna ? GO:0002181 ... P62277 33188728
    17 7jqc:Q (3.3) BS01 rna ? GO:0000028 ... G1U0Q2 33188728
    18 7jqc:R (3.3) BS01 rna ? GO:0000462 ... G1SGX4 33188728
    19 7jqc:S (3.3) BS01 rna ? GO:0003735 ... G1TU13 33188728
    20 7jqc:T (3.3) BS01 rna ? GO:0003676 ... G1TPG3 33188728
    21 7jqc:U (3.3) BS01 rna ? GO:0000028 ... G1TN62 33188728
    22 7jqc:V (3.3) BS01 rna ? GO:0003723 ... G1SIZ2 33188728
    23 7jqc:X (3.3) BS01 rna ? GO:0000028 ... G1T1F0 33188728
    24 7jqc:X (3.3) BS02 rna ? GO:0000028 ... G1T1F0 33188728
    25 7jqc:Y (3.3) BS01 rna ? GO:0003735 ... G1TG89 33188728
    26 7jqc:Z (3.3) BS01 rna ? GO:0003735 ... G1T3D8 33188728
    27 7jqc:a (3.3) BS01 rna ? GO:0003735 ... G1TDB3 33188728
    28 7jqc:a (3.3) BS02 rna ? GO:0003735 ... G1TDB3 33188728
    29 7jqc:b (3.3) BS01 rna ? GO:0003729 ... G1TFE8 33188728
    30 7jqc:c (3.3) BS01 rna ? GO:0003735 ... G1SZ47 33188728
    31 7jqc:d (3.3) BS01 rna ? GO:0000028 ... G1TIB4 33188728
    32 7jqc:e (3.3) BS01 rna ? GO:0000028 ... G1TZ76 33188728
    33 7jqc:f (3.3) BS01 rna ? GO:0003735 ... G1T8A2 33188728
    34 7jqc:g (3.3) BS01 rna ? GO:0002181 ... P62979 33188728
    35 7jqc:h (3.3) BS01 rna ? GO:0001891 ... G1SJB4 33188728
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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