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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7jk9:A (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    2 7jk9:A (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    3 7jk9:AA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    4 7jk9:AA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    5 7jk9:B (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    6 7jk9:B (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    7 7jk9:BA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    8 7jk9:BA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    9 7jk9:C (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    10 7jk9:C (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    11 7jk9:CA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    12 7jk9:CA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    13 7jk9:D (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    14 7jk9:D (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    15 7jk9:DA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    16 7jk9:DA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    17 7jk9:E (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    18 7jk9:E (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    19 7jk9:EA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    20 7jk9:EA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    21 7jk9:F (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    22 7jk9:F (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    23 7jk9:FA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    24 7jk9:FA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    25 7jk9:G (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    26 7jk9:G (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    27 7jk9:GA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    28 7jk9:GA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    29 7jk9:H (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    30 7jk9:H (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    31 7jk9:HA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    32 7jk9:HA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    33 7jk9:I (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    34 7jk9:I (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    35 7jk9:IA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    36 7jk9:IA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    37 7jk9:J (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    38 7jk9:J (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    39 7jk9:JA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    40 7jk9:JA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    41 7jk9:K (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    42 7jk9:K (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    43 7jk9:KA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    44 7jk9:KA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    45 7jk9:L (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    46 7jk9:L (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    47 7jk9:LA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    48 7jk9:LA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    49 7jk9:M (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    50 7jk9:M (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    51 7jk9:MA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    52 7jk9:MA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    53 7jk9:N (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    54 7jk9:N (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    55 7jk9:NA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    56 7jk9:NA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    57 7jk9:O (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    58 7jk9:O (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    59 7jk9:OA (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    60 7jk9:OA (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    61 7jk9:P (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    62 7jk9:P (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    63 7jk9:Q (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    64 7jk9:Q (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    65 7jk9:R (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    66 7jk9:R (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    67 7jk9:S (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    68 7jk9:S (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    69 7jk9:T (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    70 7jk9:T (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    71 7jk9:V (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    72 7jk9:V (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    73 7jk9:W (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    74 7jk9:W (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    75 7jk9:X (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    76 7jk9:X (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    77 7jk9:Y (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    78 7jk9:Y (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    79 7jk9:Z (3.1) BS01 NDP 1.3.1.33 GO:0003729 ... P21218 33875834
    80 7jk9:Z (3.1) BS02 PMR 1.3.1.33 GO:0003729 ... P21218 33875834
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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