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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7coh:A (1.3) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    2 7coh:A (1.3) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    3 7coh:A (1.3) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    4 7coh:A (1.3) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    5 7coh:A (1.3) BS05 DMU 7.1.1.9 GO:0004129 ... P00396 N/A
    6 7coh:A (1.3) BS06 DMU 7.1.1.9 GO:0004129 ... P00396 N/A
    7 7coh:A (1.3) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 N/A
    8 7coh:B (1.3) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 N/A
    9 7coh:B (1.3) BS02 DMU 7.1.1.9 GO:0004129 ... P68530 N/A
    10 7coh:B (1.3) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 N/A
    11 7coh:B (1.3) BS04 CUA 7.1.1.9 GO:0004129 ... P68530 N/A
    12 7coh:B (1.3) BS05 DMU 7.1.1.9 GO:0004129 ... P68530 N/A
    13 7coh:C (1.3) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    14 7coh:C (1.3) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    15 7coh:C (1.3) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    16 7coh:C (1.3) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    17 7coh:C (1.3) BS05 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    18 7coh:D (1.3) BS01 DMU ? GO:0006123 ... P00423 N/A
    19 7coh:F (1.3) BS01 ZN ? GO:0005740 ... P00428 N/A
    20 7coh:G (1.3) BS01 DMU ? GO:0005743 ... P07471 N/A
    21 7coh:H (1.3) BS01 DMU ? GO:0005739 ... P00429 N/A
    22 7coh:J (1.3) BS01 DMU ? GO:0006123 ... P07470 N/A
    23 7coh:J (1.3) BS02 DMU ? GO:0006123 ... P07470 N/A
    24 7coh:L (1.3) BS01 DMU ? GO:0006123 ... P00430 N/A
    25 7coh:M (1.3) BS01 DMU ? GO:0006123 ... P10175 N/A
    26 7coh:N (1.3) BS01 DMU 7.1.1.9 GO:0004129 ... P00396 N/A
    27 7coh:N (1.3) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    28 7coh:N (1.3) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 N/A
    29 7coh:N (1.3) BS04 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    30 7coh:N (1.3) BS05 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    31 7coh:N (1.3) BS06 DMU 7.1.1.9 GO:0004129 ... P00396 N/A
    32 7coh:N (1.3) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 N/A
    33 7coh:O (1.3) BS01 DMU 7.1.1.9 GO:0004129 ... P68530 N/A
    34 7coh:O (1.3) BS02 HEA 7.1.1.9 GO:0004129 ... P68530 N/A
    35 7coh:O (1.3) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 N/A
    36 7coh:O (1.3) BS04 CUA 7.1.1.9 GO:0004129 ... P68530 N/A
    37 7coh:P (1.3) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    38 7coh:P (1.3) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    39 7coh:P (1.3) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    40 7coh:P (1.3) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    41 7coh:P (1.3) BS05 DMU 7.1.1.9 GO:0004129 ... P00415 N/A
    42 7coh:Q (1.3) BS01 DMU ? GO:0006123 ... P00423 N/A
    43 7coh:S (1.3) BS01 ZN ? GO:0005740 ... P00428 N/A
    44 7coh:T (1.3) BS01 DMU ? GO:0005743 ... P07471 N/A
    45 7coh:U (1.3) BS01 DMU ? GO:0005739 ... P00429 N/A
    46 7coh:W (1.3) BS01 DMU ? GO:0006123 ... P07470 N/A
    47 7coh:W (1.3) BS02 DMU ? GO:0006123 ... P07470 N/A
    48 7coh:Y (1.3) BS01 DMU ? GO:0006123 ... P00430 N/A
    49 7coh:Z (1.3) BS01 DMU ? GO:0006123 ... P10175 N/A
    50 7coh:Z (1.3) BS02 DMU ? GO:0006123 ... P10175 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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