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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ck8:A (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    2 7ck8:A (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    3 7ck8:A (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    4 7ck8:B (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    5 7ck8:B (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    6 7ck8:B (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    7 7ck8:C (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    8 7ck8:C (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    9 7ck8:C (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    10 7ck8:D (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    11 7ck8:D (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    12 7ck8:D (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    13 7ck8:E (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    14 7ck8:E (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    15 7ck8:E (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    16 7ck8:F (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    17 7ck8:F (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    18 7ck8:F (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    19 7ck8:G (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    20 7ck8:G (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    21 7ck8:G (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    22 7ck8:G (1.8) BS04 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    23 7ck8:H (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    24 7ck8:H (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    25 7ck8:I (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    26 7ck8:I (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    27 7ck8:I (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    28 7ck8:I (1.8) BS04 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    29 7ck8:J (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    30 7ck8:J (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    31 7ck8:K (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    32 7ck8:K (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    33 7ck8:L (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    34 7ck8:L (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    35 7ck8:L (1.8) BS03 OXY 1.16.3.1 GO:0004322 ... P02794 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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