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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7bt6:A (3.12) BS01 rna ? GO:0002181 ... P0CX45 33037216
    2 7bt6:B (3.12) BS01 rna ? GO:0000027 ... P14126 33037216
    3 7bt6:C (3.12) BS01 rna ? GO:0002181 ... P10664 33037216
    4 7bt6:C (3.12) BS02 rna ? GO:0002181 ... P10664 33037216
    5 7bt6:D (3.12) BS01 rna ? GO:0000027 ... P26321 33037216
    6 7bt6:D (3.12) BS02 rna ? GO:0000027 ... P26321 33037216
    7 7bt6:E (3.12) BS01 rna ? GO:0000027 ... Q02326 33037216
    8 7bt6:F (3.12) BS01 rna ? GO:0000463 ... P05737 33037216
    9 7bt6:G (3.12) BS01 rna ? GO:0000470 ... P17076 33037216
    10 7bt6:H (3.12) BS01 rna ? GO:0002181 ... P05738 33037216
    11 7bt6:J (3.12) BS01 rna ? GO:0000027 ... P0C0W9 33037216
    12 7bt6:J (3.12) BS02 rna ? GO:0000027 ... P0C0W9 33037216
    13 7bt6:L (3.12) BS01 rna ? GO:0002181 ... Q12690 33037216
    14 7bt6:L (3.12) BS02 rna ? GO:0002181 ... Q12690 33037216
    15 7bt6:M (3.12) BS01 rna ? GO:0000027 ... P36105 33037216
    16 7bt6:N (3.12) BS01 rna ? GO:0002181 ... P05748 33037216
    17 7bt6:N (3.12) BS02 rna ? GO:0002181 ... P05748 33037216
    18 7bt6:O (3.12) BS01 rna ? GO:0000470 ... P26784 33037216
    19 7bt6:P (3.12) BS01 rna ? GO:0000448 ... P05740 33037216
    20 7bt6:P (3.12) BS02 rna ? GO:0000448 ... P05740 33037216
    21 7bt6:Q (3.12) BS01 rna ? GO:0002181 ... P0CX49 33037216
    22 7bt6:R (3.12) BS01 rna ? GO:0002181 ... P0CX82 33037216
    23 7bt6:S (3.12) BS01 rna ? GO:0002181 ... P0CX23 33037216
    24 7bt6:T (3.12) BS01 rna ? GO:0002181 ... Q02753 33037216
    25 7bt6:U (3.12) BS01 rna ? GO:0002181 ... P05749 33037216
    26 7bt6:V (3.12) BS01 rna ? GO:0002181 ... P0CX41 33037216
    27 7bt6:W (3.12) BS01 rna ? GO:0000027 ... P33201 33037216
    28 7bt6:X (3.12) BS01 rna ? GO:0000027 ... P04456 33037216
    29 7bt6:Y (3.12) BS01 rna ? GO:0002181 ... P05743 33037216
    30 7bt6:Y (3.12) BS02 rna ? GO:0002181 ... P05743 33037216
    31 7bt6:Z (3.12) BS01 rna ? GO:0002181 ... P0C2H6 33037216
    32 7bt6:a (3.12) BS01 rna ? GO:0002181 ... P02406 33037216
    33 7bt6:b (3.12) BS01 rna ? GO:0000054 ... Q02892 33037216
    34 7bt6:b (3.12) BS02 GTP ? GO:0000054 ... Q02892 33037216
    35 7bt6:b (3.12) BS03 MG ? GO:0000054 ... Q02892 33037216
    36 7bt6:c (3.12) BS01 rna ? GO:0002181 ... P14120 33037216
    37 7bt6:d (3.12) BS01 rna ? GO:0002181 ... P0C2H8 33037216
    38 7bt6:e (3.12) BS01 rna ? GO:0002181 ... P38061 33037216
    39 7bt6:f (3.12) BS01 rna ? GO:0000027 ... P05744 33037216
    40 7bt6:g (3.12) BS01 rna ? GO:0002181 ... P87262 33037216
    41 7bt6:h (3.12) BS01 rna ? GO:0000463 ... P0CX84 33037216
    42 7bt6:h (3.12) BS02 rna ? GO:0000463 ... P0CX84 33037216
    43 7bt6:i (3.12) BS01 rna ? GO:0002181 ... P05745 33037216
    44 7bt6:j (3.12) BS01 rna ? GO:0000448 ... P49166 33037216
    45 7bt6:j (3.12) BS02 rna ? GO:0000448 ... P49166 33037216
    46 7bt6:j (3.12) BS03 ZN ? GO:0000448 ... P49166 33037216
    47 7bt6:k (3.12) BS01 rna ? GO:0002181 ... P49167 33037216
    48 7bt6:m (3.12) BS01 rna ? GO:0000055 ... P53742 33037216
    49 7bt6:m (3.12) BS02 GTP ? GO:0000055 ... P53742 33037216
    50 7bt6:p (3.12) BS01 rna ? GO:0002181 ... P0CX25 33037216
    51 7bt6:p (3.12) BS02 ZN ? GO:0002181 ... P0CX25 33037216
    52 7bt6:r (3.12) BS01 rna ? GO:0000460 ... P40078 33037216
    53 7bt6:u (3.12) BS01 rna ? GO:0001671 ... Q07915 33037216
    54 7bt6:v (3.12) BS01 rna ? GO:0000027 ... P36160 33037216
    55 7bt6:v (3.12) BS02 rna ? GO:0000027 ... P36160 33037216
    56 7bt6:w (3.12) BS01 rna ? GO:0000055 ... Q08746 33037216
    57 7bt6:y (3.12) BS01 rna ? GO:0000054 ... Q12522 33037216
    58 7bt6:z (3.12) BS01 rna ? GO:0003674 ... P38202 33037216
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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