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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7afo:D (3.93) BS01 rna ? GO:0000028 ... P0A7V8 34088665
    2 7afo:E (3.93) BS01 rna ? GO:0000028 ... P0A7W1 34088665
    3 7afo:F (3.93) BS01 rna ? GO:0002181 ... P02358 34088665
    4 7afo:H (3.93) BS01 rna ? GO:0000028 ... P0A7W7 34088665
    5 7afo:K (3.93) BS01 rna ? GO:0002181 ... P0A7R9 34088665
    6 7afo:L (3.93) BS01 rna ? GO:0000049 ... P0A7S3 34088665
    7 7afo:O (3.93) BS01 rna ? GO:0000028 ... P0ADZ4 34088665
    8 7afo:P (3.93) BS01 rna ? GO:0000028 ... P0A7T3 34088665
    9 7afo:Q (3.93) BS01 rna ? GO:0000028 ... P0AG63 34088665
    10 7afo:R (3.93) BS01 rna ? GO:0002181 ... P0A7T7 34088665
    11 7afo:T (3.93) BS01 rna ? GO:0000028 ... P0A7U7 34088665
    12 7afo:U (3.93) BS01 rna ? GO:0000028 ... P68679 34088665
    13 7afo:Y (3.93) BS01 rna 2.1.1.182 GO:0000028 ... P06992 34088665
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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