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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7a18:1 (3.4) BS01 rna ? GO:0003735 ... Q9RSS4 34417608
    2 7a18:2 (3.4) BS01 rna ? GO:0003735 ... Q9RSH2 34417608
    3 7a18:3 (3.4) BS01 rna ? GO:0003735 ... Q9RSW6 34417608
    4 7a18:A (3.4) BS01 rna ? GO:0002181 ... Q9RXJ9 34417608
    5 7a18:A (3.4) BS02 MG ? GO:0002181 ... Q9RXJ9 34417608
    6 7a18:B (3.4) BS01 rna ? GO:0003735 ... Q9RXK2 34417608
    7 7a18:C (3.4) BS01 rna ? GO:0003735 ... Q9RXK1 34417608
    8 7a18:D (3.4) BS01 rna ? GO:0000049 ... Q9RXJ0 34417608
    9 7a18:D (3.4) BS02 rna ? GO:0000049 ... Q9RXJ0 34417608
    10 7a18:E (3.4) BS01 rna ? GO:0002181 ... Q9RSL3 34417608
    11 7a18:G (3.4) BS01 rna ? GO:0003735 ... Q9RXY1 34417608
    12 7a18:H (3.4) BS01 rna ? GO:0003735 ... Q9RXJ2 34417608
    13 7a18:I (3.4) BS01 rna ? GO:0003735 ... Q9RSK9 34417608
    14 7a18:J (3.4) BS01 rna ? GO:0000049 ... Q9RXJ5 34417608
    15 7a18:J (3.4) BS02 rna ? GO:0000049 ... Q9RXJ5 34417608
    16 7a18:K (3.4) BS01 rna ? GO:0003735 ... Q9RSJ5 34417608
    17 7a18:L (3.4) BS01 rna ? GO:0003735 ... Q9RSL2 34417608
    18 7a18:L (3.4) BS02 rna ? GO:0003735 ... Q9RSL2 34417608
    19 7a18:M (3.4) BS01 rna ? GO:0003735 ... Q9RWB4 34417608
    20 7a18:N (3.4) BS01 rna ? GO:0000027 ... Q9RSW7 34417608
    21 7a18:O (3.4) BS01 rna ? GO:0003723 ... Q9RY64 34417608
    22 7a18:P (3.4) BS01 rna ? GO:0003735 ... Q9RXJ7 34417608
    23 7a18:Q (3.4) BS01 rna ? GO:0000027 ... Q9RXK0 34417608
    24 7a18:R (3.4) BS01 rna ? GO:0003723 ... Q9RXJ1 34417608
    25 7a18:S (3.4) BS01 rna ? GO:0003735 ... Q9RX88 34417608
    26 7a18:S (3.4) BS02 rna ? GO:0003735 ... Q9RX88 34417608
    27 7a18:T (3.4) BS01 rna ? GO:0003735 ... Q9RY65 34417608
    28 7a18:U (3.4) BS01 rna ? GO:0003735 ... Q9RRG8 34417608
    29 7a18:V (3.4) BS01 rna ? GO:0003735 ... Q9RXJ4 34417608
    30 7a18:W (3.4) BS01 rna ? GO:0003735 ... Q9RSL0 34417608
    31 7a18:W (3.4) BS02 rna ? GO:0003735 ... Q9RSL0 34417608
    32 7a18:Z (3.4) BS01 rna ? GO:0003735 ... P49228 34417608
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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