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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zu9:A (6.2) BS01 rna ? GO:0001677 ... P38912 33289941
    2 6zu9:B (6.2) BS01 rna ? GO:0000054 ... P05750 33289941
    3 6zu9:C (6.2) BS01 rna ? GO:0000028 ... P26783 33289941
    4 6zu9:C (6.2) BS02 MG ? GO:0000028 ... P26783 33289941
    5 6zu9:D (6.2) BS01 rna ? GO:0000054 ... Q08745 33289941
    6 6zu9:E (6.2) BS01 rna ? GO:0000028 ... Q01855 33289941
    7 6zu9:F (6.2) BS01 rna ? GO:0000028 ... P48589 33289941
    8 6zu9:H (6.2) BS01 rna ? GO:0000462 ... P0CX51 33289941
    9 6zu9:I (6.2) BS01 rna ? GO:0000028 ... P02407 33289941
    10 6zu9:J (6.2) BS01 rna ? GO:0000054 ... P0CX55 33289941
    11 6zu9:K (6.2) BS01 rna ? GO:0000028 ... P07280 33289941
    12 6zu9:L (6.2) BS01 rna ? GO:0000462 ... P38701 33289941
    13 6zu9:M (6.2) BS01 rna ? GO:0002181 ... Q3E792 33289941
    14 6zu9:N (6.2) BS01 rna ? GO:0002181 ... P41057 33289941
    15 6zu9:O (6.2) BS01 rna ? GO:0000028 ... P05759 33289941
    16 6zu9:O (6.2) BS02 ZN ? GO:0000028 ... P05759 33289941
    17 6zu9:P (6.2) BS01 rna ? GO:0000028 ... P32905 33289941
    18 6zu9:Q (6.2) BS01 rna ? GO:0000462 ... P33442 33289941
    19 6zu9:R (6.2) BS01 rna ? GO:0000054 ... P25443 33289941
    20 6zu9:S (6.2) BS01 rna ? GO:0002181 ... P0CX35 33289941
    21 6zu9:T (6.2) BS01 rna ? GO:0000462 ... P0CX37 33289941
    22 6zu9:U (6.2) BS01 rna ? GO:0002181 ... P26786 33289941
    23 6zu9:V (6.2) BS01 rna ? GO:0000462 ... P0CX39 33289941
    24 6zu9:W (6.2) BS01 rna ? GO:0000462 ... O13516 33289941
    25 6zu9:X (6.2) BS01 rna ? GO:0000028 ... P0CX47 33289941
    26 6zu9:Y (6.2) BS01 rna ? GO:0000462 ... P05756 33289941
    27 6zu9:Z (6.2) BS01 rna ? GO:0000028 ... P06367 33289941
    28 6zu9:b (6.2) BS01 rna ? GO:0002181 ... P0C0W1 33289941
    29 6zu9:c (6.2) BS01 rna ? GO:0000462 ... P0CX29 33289941
    30 6zu9:d (6.2) BS01 rna ? GO:0000462 ... P0CX31 33289941
    31 6zu9:e (6.2) BS01 rna ? GO:0000054 ... P39938 33289941
    32 6zu9:f (6.2) BS01 rna ? GO:0000028 ... P35997 33289941
    33 6zu9:g (6.2) BS01 rna ? GO:0002181 ... P0CX33 33289941
    34 6zu9:h (6.2) BS01 rna ? GO:0001965 ... P38011 33289941
    35 6zu9:i (6.2) BS01 rna ? GO:0000028 ... P0C0X0 33289941
    36 6zu9:k (6.2) BS01 rna ? GO:0000054 ... Q03195 33289941
    37 6zu9:k (6.2) BS02 ADP ? GO:0000054 ... Q03195 33289941
    38 6zu9:k (6.2) BS03 ATP ? GO:0000054 ... Q03195 33289941
    39 6zu9:k (6.2) BS04 SF4 ? GO:0000054 ... Q03195 33289941
    40 6zu9:k (6.2) BS05 SF4 ? GO:0000054 ... Q03195 33289941
    41 6zu9:m (6.2) BS01 rna ? GO:0001732 ... P38431 33289941
    42 6zu9:m (6.2) BS02 rna ? GO:0001732 ... P38431 33289941
    43 6zu9:p (6.2) BS01 rna ? GO:0001732 ... P06103 33289941
    44 6zu9:q (6.2) BS01 rna ? GO:0001732 ... P32497 33289941
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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