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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 159 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yxr:1 (3.4) BS01 CLA ? GO:0009765 ... C1K003 32569661
    2 6yxr:1 (3.4) BS02 CLA ? GO:0009765 ... C1K003 32569661
    3 6yxr:1 (3.4) BS03 CLA ? GO:0009765 ... C1K003 32569661
    4 6yxr:1 (3.4) BS04 CLA ? GO:0009765 ... C1K003 32569661
    5 6yxr:1 (3.4) BS05 CLA ? GO:0009765 ... C1K003 32569661
    6 6yxr:1 (3.4) BS06 CLA ? GO:0009765 ... C1K003 32569661
    7 6yxr:1 (3.4) BS07 CLA ? GO:0009765 ... C1K003 32569661
    8 6yxr:1 (3.4) BS08 CLA ? GO:0009765 ... C1K003 32569661
    9 6yxr:1 (3.4) BS09 CHL ? GO:0009765 ... C1K003 32569661
    10 6yxr:1 (3.4) BS10 CLA ? GO:0009765 ... C1K003 32569661
    11 6yxr:1 (3.4) BS11 CLA ? GO:0009765 ... C1K003 32569661
    12 6yxr:1 (3.4) BS12 CLA ? GO:0009765 ... C1K003 32569661
    13 6yxr:1 (3.4) BS13 CLA ? GO:0009765 ... C1K003 32569661
    14 6yxr:2 (3.4) BS01 CLA N/A GO:0009765 ... N/A 32569661
    15 6yxr:2 (3.4) BS02 CLA N/A GO:0009765 ... N/A 32569661
    16 6yxr:2 (3.4) BS03 CLA N/A GO:0009765 ... N/A 32569661
    17 6yxr:2 (3.4) BS04 CLA N/A GO:0009765 ... N/A 32569661
    18 6yxr:2 (3.4) BS05 CLA N/A GO:0009765 ... N/A 32569661
    19 6yxr:2 (3.4) BS06 CLA N/A GO:0009765 ... N/A 32569661
    20 6yxr:2 (3.4) BS07 CLA N/A GO:0009765 ... N/A 32569661
    21 6yxr:2 (3.4) BS08 CHL N/A GO:0009765 ... N/A 32569661
    22 6yxr:2 (3.4) BS09 CHL N/A GO:0009765 ... N/A 32569661
    23 6yxr:2 (3.4) BS10 CHL N/A GO:0009765 ... N/A 32569661
    24 6yxr:2 (3.4) BS11 CLA N/A GO:0009765 ... N/A 32569661
    25 6yxr:2 (3.4) BS12 CHL N/A GO:0009765 ... N/A 32569661
    26 6yxr:2 (3.4) BS13 CLA N/A GO:0009765 ... N/A 32569661
    27 6yxr:2 (3.4) BS14 CLA N/A GO:0009765 ... N/A 32569661
    28 6yxr:3 (3.4) BS01 CHL ? GO:0009765 ... C1K004 32569661
    29 6yxr:3 (3.4) BS02 CLA ? GO:0009765 ... C1K004 32569661
    30 6yxr:3 (3.4) BS03 CLA ? GO:0009765 ... C1K004 32569661
    31 6yxr:3 (3.4) BS04 CHL ? GO:0009765 ... C1K004 32569661
    32 6yxr:3 (3.4) BS05 CLA ? GO:0009765 ... C1K004 32569661
    33 6yxr:3 (3.4) BS06 CLA ? GO:0009765 ... C1K004 32569661
    34 6yxr:3 (3.4) BS07 CLA ? GO:0009765 ... C1K004 32569661
    35 6yxr:3 (3.4) BS08 CLA ? GO:0009765 ... C1K004 32569661
    36 6yxr:3 (3.4) BS09 CLA ? GO:0009765 ... C1K004 32569661
    37 6yxr:3 (3.4) BS10 CLA ? GO:0009765 ... C1K004 32569661
    38 6yxr:3 (3.4) BS11 CLA ? GO:0009765 ... C1K004 32569661
    39 6yxr:3 (3.4) BS12 CLA ? GO:0009765 ... C1K004 32569661
    40 6yxr:3 (3.4) BS13 CLA ? GO:0009765 ... C1K004 32569661
    41 6yxr:3 (3.4) BS14 CLA ? GO:0009765 ... C1K004 32569661
    42 6yxr:3 (3.4) BS15 CLA ? GO:0009765 ... C1K004 32569661
    43 6yxr:4 (3.4) BS01 CHL N/A GO:0009765 ... N/A 32569661
    44 6yxr:4 (3.4) BS02 CLA N/A GO:0009765 ... N/A 32569661
    45 6yxr:4 (3.4) BS03 CLA N/A GO:0009765 ... N/A 32569661
    46 6yxr:4 (3.4) BS04 CLA N/A GO:0009765 ... N/A 32569661
    47 6yxr:4 (3.4) BS05 CLA N/A GO:0009765 ... N/A 32569661
    48 6yxr:4 (3.4) BS06 CLA N/A GO:0009765 ... N/A 32569661
    49 6yxr:4 (3.4) BS07 CLA N/A GO:0009765 ... N/A 32569661
    50 6yxr:4 (3.4) BS08 CLA N/A GO:0009765 ... N/A 32569661
    51 6yxr:4 (3.4) BS09 CLA N/A GO:0009765 ... N/A 32569661
    52 6yxr:4 (3.4) BS10 CHL N/A GO:0009765 ... N/A 32569661
    53 6yxr:4 (3.4) BS11 CHL N/A GO:0009765 ... N/A 32569661
    54 6yxr:4 (3.4) BS12 CLA N/A GO:0009765 ... N/A 32569661
    55 6yxr:4 (3.4) BS13 CHL N/A GO:0009765 ... N/A 32569661
    56 6yxr:4 (3.4) BS14 CLA N/A GO:0009765 ... N/A 32569661
    57 6yxr:A (3.4) BS01 CL0 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    58 6yxr:A (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    59 6yxr:A (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    60 6yxr:A (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    61 6yxr:A (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    62 6yxr:A (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    63 6yxr:A (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    64 6yxr:A (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    65 6yxr:A (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    66 6yxr:A (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    67 6yxr:A (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    68 6yxr:A (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    69 6yxr:A (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    70 6yxr:A (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    71 6yxr:A (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    72 6yxr:A (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    73 6yxr:A (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    74 6yxr:A (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    75 6yxr:A (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    76 6yxr:A (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    77 6yxr:A (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    78 6yxr:A (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    79 6yxr:A (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    80 6yxr:A (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    81 6yxr:A (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    82 6yxr:A (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    83 6yxr:A (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    84 6yxr:A (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    85 6yxr:A (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    86 6yxr:A (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    87 6yxr:A (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    88 6yxr:A (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    89 6yxr:A (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    90 6yxr:A (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    91 6yxr:A (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    92 6yxr:A (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    93 6yxr:A (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    94 6yxr:A (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    95 6yxr:A (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    96 6yxr:A (3.4) BS40 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    97 6yxr:A (3.4) BS41 PQN 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    98 6yxr:A (3.4) BS42 SF4 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    99 6yxr:A (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    100 6yxr:A (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    101 6yxr:A (3.4) BS45 CLA 1.97.1.12 GO:0000287 ... D0FXV2 32569661
    102 6yxr:B (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    103 6yxr:B (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    104 6yxr:B (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    105 6yxr:B (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    106 6yxr:B (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    107 6yxr:B (3.4) BS06 SF4 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    108 6yxr:B (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    109 6yxr:B (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    110 6yxr:B (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    111 6yxr:B (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    112 6yxr:B (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    113 6yxr:B (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    114 6yxr:B (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    115 6yxr:B (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    116 6yxr:B (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    117 6yxr:B (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    118 6yxr:B (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    119 6yxr:B (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    120 6yxr:B (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    121 6yxr:B (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    122 6yxr:B (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    123 6yxr:B (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    124 6yxr:B (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    125 6yxr:B (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    126 6yxr:B (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    127 6yxr:B (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    128 6yxr:B (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    129 6yxr:B (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    130 6yxr:B (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    131 6yxr:B (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    132 6yxr:B (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    133 6yxr:B (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    134 6yxr:B (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    135 6yxr:B (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    136 6yxr:B (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    137 6yxr:B (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    138 6yxr:B (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    139 6yxr:B (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    140 6yxr:B (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    141 6yxr:B (3.4) BS40 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    142 6yxr:B (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    143 6yxr:B (3.4) BS42 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    144 6yxr:B (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    145 6yxr:B (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    146 6yxr:B (3.4) BS45 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    147 6yxr:B (3.4) BS46 PQN 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    148 6yxr:B (3.4) BS47 CLA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    149 6yxr:C (3.4) BS01 SF4 1.97.1.12 GO:0009055 ... D0FXW7 32569661
    150 6yxr:C (3.4) BS02 SF4 1.97.1.12 GO:0009055 ... D0FXW7 32569661
    151 6yxr:F (3.4) BS01 CLA N/A GO:0009522 ... N/A 32569661
    152 6yxr:F (3.4) BS02 CLA N/A GO:0009522 ... N/A 32569661
    153 6yxr:F (3.4) BS03 CLA N/A GO:0009522 ... N/A 32569661
    154 6yxr:F (3.4) BS04 CLA N/A GO:0009522 ... N/A 32569661
    155 6yxr:F (3.4) BS05 CLA N/A GO:0009522 ... N/A 32569661
    156 6yxr:J (3.4) BS01 CLA ? GO:0009507 ... D0FXW0 32569661
    157 6yxr:J (3.4) BS02 CLA ? GO:0009507 ... D0FXW0 32569661
    158 6yxr:J (3.4) BS03 CLA ? GO:0009507 ... D0FXW0 32569661
    159 6yxr:J (3.4) BS04 CLA ? GO:0009507 ... D0FXW0 32569661
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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