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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ywv:0 (3.03) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    2 6ywv:0 (3.03) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    3 6ywv:1 (3.03) BS01 rna ? GO:0005739 ... Q7RXV8 33056988
    4 6ywv:2 (3.03) BS01 rna N/A GO:0003735 ... N/A 33056988
    5 6ywv:2 (3.03) BS02 NAD N/A GO:0003735 ... N/A 33056988
    6 6ywv:3 (3.03) BS01 rna ? GO:0003735 ... Q7S5W0 33056988
    7 6ywv:4 (3.03) BS01 rna ? GO:0003735 ... Q7S300 33056988
    8 6ywv:5 (3.03) BS01 rna ? GO:0003723 ... Q7SA88 33056988
    9 6ywv:6 (3.03) BS01 rna ? GO:0003735 ... Q7S1Z3 33056988
    10 6ywv:7 (3.03) BS01 rna ? GO:0003735 ... Q7S518 33056988
    11 6ywv:8 (3.03) BS01 rna ? GO:0005739 ... Q7S711 33056988
    12 6ywv:9 (3.03) BS01 rna ? GO:0003735 ... Q7S1R6 33056988
    13 6ywv:B (3.03) BS01 rna ? GO:0003723 ... Q7SCX7 33056988
    14 6ywv:C (3.03) BS01 rna ? GO:0003735 ... Q1K8T6 33056988
    15 6ywv:D (3.03) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    16 6ywv:E (3.03) BS01 rna ? GO:0003723 ... Q1K6P0 33056988
    17 6ywv:E (3.03) BS02 NAD ? GO:0003723 ... Q1K6P0 33056988
    18 6ywv:F (3.03) BS01 rna ? GO:0003735 ... Q7RZF0 33056988
    19 6ywv:H (3.03) BS01 rna ? GO:0003729 ... Q7SBV6 33056988
    20 6ywv:I (3.03) BS01 rna ? GO:0003735 ... Q7SBJ8 33056988
    21 6ywv:J (3.03) BS01 rna ? GO:0003735 ... Q7SB98 33056988
    22 6ywv:K (3.03) BS01 rna ? GO:0003735 ... F5HIJ5 33056988
    23 6ywv:K (3.03) BS02 MG ? GO:0003735 ... F5HIJ5 33056988
    24 6ywv:L (3.03) BS01 rna ? GO:0003735 ... Q1K8C8 33056988
    25 6ywv:M (3.03) BS01 rna ? GO:0003735 ... Q7RYW8 33056988
    26 6ywv:N (3.03) BS01 rna ? GO:0003735 ... Q7SGE5 33056988
    27 6ywv:O (3.03) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    28 6ywv:P (3.03) BS01 rna ? GO:0003735 ... Q7SA60 33056988
    29 6ywv:Q (3.03) BS01 rna ? GO:0003735 ... Q7RXU7 33056988
    30 6ywv:R (3.03) BS01 rna ? GO:0003735 ... Q1K730 33056988
    31 6ywv:S (3.03) BS01 rna ? GO:0003735 ... Q7SC44 33056988
    32 6ywv:T (3.03) BS01 rna ? GO:0003735 ... Q7S910 33056988
    33 6ywv:U (3.03) BS01 rna ? GO:0003735 ... Q1K8Y7 33056988
    34 6ywv:V (3.03) BS01 rna ? GO:0003735 ... Q1K7L7 33056988
    35 6ywv:W (3.03) BS01 rna ? GO:0003735 ... Q1K4P1 33056988
    36 6ywv:W (3.03) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    37 6ywv:X (3.03) BS01 rna ? GO:0003735 ... V5IM60 33056988
    38 6ywv:Y (3.03) BS01 rna ? GO:0003735 ... Q1K7P9 33056988
    39 6ywv:a (3.03) BS01 rna ? GO:0003735 ... Q1K6U7 33056988
    40 6ywv:b (3.03) BS01 rna ? GO:0003735 ... Q7SEK9 33056988
    41 6ywv:c (3.03) BS01 rna ? GO:0003735 ... U9W8F2 33056988
    42 6ywv:d (3.03) BS01 rna ? GO:0000002 ... Q7RYM5 33056988
    43 6ywv:f (3.03) BS01 rna ? GO:0003735 ... Q7RZ62 33056988
    44 6ywv:g (3.03) BS01 rna ? GO:0003735 ... Q7RX40 33056988
    45 6ywv:i (3.03) BS01 rna ? GO:0003735 ... Q7SCZ3 33056988
    46 6ywv:n (3.03) BS01 rna ? GO:0005739 ... Q7SAC2 33056988
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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