Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 105 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ydp:AB (3.0) BS01 rna ? GO:0003735 ... F1S001 32602580
    2 6ydp:AB (3.0) BS02 MG ? GO:0003735 ... F1S001 32602580
    3 6ydp:AC (3.0) BS01 rna ? GO:0005739 ... A0A287ANU4 32602580
    4 6ydp:AE (3.0) BS01 rna ? GO:0003723 ... F1SU66 32602580
    5 6ydp:AF (3.0) BS01 rna N/A GO:0003735 ... N/A 32602580
    6 6ydp:AG (3.0) BS01 rna ? GO:0000028 ... A0A286ZJ25 32602580
    7 6ydp:AG (3.0) BS02 rna ? GO:0000028 ... A0A286ZJ25 32602580
    8 6ydp:AI (3.0) BS01 rna ? GO:0003723 ... I3LU08 32602580
    9 6ydp:AI (3.0) BS02 rna ? GO:0003723 ... I3LU08 32602580
    10 6ydp:AJ (3.0) BS01 rna ? GO:0005739 ... F1RUU2 32602580
    11 6ydp:AK (3.0) BS01 rna ? GO:0003735 ... A0A286ZJJ6 32602580
    12 6ydp:AL (3.0) BS01 rna ? GO:0003735 ... A0A0M3KL52 32602580
    13 6ydp:AN (3.0) BS01 rna ? GO:0003735 ... A0A0M3KL53 32602580
    14 6ydp:AO (3.0) BS01 rna ? GO:0003735 ... A0A287BMP0 32602580
    15 6ydp:AP (3.0) BS01 rna ? GO:0003735 ... A0A480JTD7 32602580
    16 6ydp:AQ (3.0) BS01 rna ? GO:0003735 ... A0A8D1UDM1 32602580
    17 6ydp:AR (3.0) BS01 rna ? GO:0003735 ... A0A0M3KL54 32602580
    18 6ydp:AR (3.0) BS02 ZN ? GO:0003735 ... A0A0M3KL54 32602580
    19 6ydp:AU (3.0) BS01 rna ? GO:0003735 ... A0A286ZNB3 32602580
    20 6ydp:Ab (3.0) BS01 rna ? GO:0003735 ... A0A287AEW3 32602580
    21 6ydp:Ac (3.0) BS01 rna ? GO:0003735 ... A0A0M3KL55 32602580
    22 6ydp:Ac (3.0) BS02 ZN ? GO:0003735 ... A0A0M3KL55 32602580
    23 6ydp:Ad (3.0) BS01 rna ? GO:0005763 ... A0A287AY01 32602580
    24 6ydp:Ae (3.0) BS01 rna ? N/A I3LK09 32602580
    25 6ydp:Ag (3.0) BS01 rna ? GO:0005654 ... A0A8D1XNL0 32602580
    26 6ydp:Ag (3.0) BS02 GTP ? GO:0005654 ... A0A8D1XNL0 32602580
    27 6ydp:Ah (3.0) BS01 peptide ? GO:0003735 ... F1RME2 32602580
    28 6ydp:Ai (3.0) BS01 rna ? N/A A0A4X1V2H3 32602580
    29 6ydp:Ai (3.0) BS02 peptide ? N/A A0A4X1V2H3 32602580
    30 6ydp:Aj (3.0) BS01 rna ? GO:0003735 ... A0A287AVS9 32602580
    31 6ydp:Am (3.0) BS01 rna ? GO:0005739 ... A0A4X1SZV4 32602580
    32 6ydp:An (3.0) BS01 rna ? GO:0005634 ... A0A8D2A802 32602580
    33 6ydp:An (3.0) BS02 rna ? GO:0005634 ... A0A8D2A802 32602580
    34 6ydp:Ap (3.0) BS01 rna ? GO:0003735 ... Q767K8 32602580
    35 6ydp:Ap (3.0) BS02 ZN ? GO:0003735 ... Q767K8 32602580
    36 6ydp:B0 (3.0) BS01 rna ? GO:0003735 ... A0A4X1U0F6 32602580
    37 6ydp:B1 (3.0) BS01 rna ? GO:0003735 ... A0A286ZTW8 32602580
    38 6ydp:B2 (3.0) BS01 rna ? GO:0003735 ... F1SGC7 32602580
    39 6ydp:B3 (3.0) BS01 rna ? GO:0003735 ... A0A8D1MIP3 32602580
    40 6ydp:B4 (3.0) BS01 rna ? GO:0003735 ... A0A4X1ULI6 32602580
    41 6ydp:B5 (3.0) BS01 rna ? GO:0003735 ... I3LTC4 32602580
    42 6ydp:B5 (3.0) BS02 ZN ? GO:0003735 ... I3LTC4 32602580
    43 6ydp:B6 (3.0) BS01 rna ? GO:0003735 ... A0A4X1TLP9 32602580
    44 6ydp:B7 (3.0) BS01 rna ? GO:0003735 ... A0A4X1UFR4 32602580
    45 6ydp:B8 (3.0) BS01 rna ? GO:0003735 ... F1SVC5 32602580
    46 6ydp:B9 (3.0) BS01 rna ? GO:0003735 ... A0A287A731 32602580
    47 6ydp:B9 (3.0) BS02 ZN ? GO:0003735 ... A0A287A731 32602580
    48 6ydp:BC (3.0) BS01 rna ? GO:0003723 ... Q96RP9 32602580
    49 6ydp:BC (3.0) BS02 rna ? GO:0003723 ... Q96RP9 32602580
    50 6ydp:BC (3.0) BS03 GNP ? GO:0003723 ... Q96RP9 32602580
    51 6ydp:BC (3.0) BS04 MG ? GO:0003723 ... Q96RP9 32602580
    52 6ydp:BD (3.0) BS01 rna ? GO:0003735 ... F1RRN2 32602580
    53 6ydp:BD (3.0) BS02 MG ? GO:0003735 ... F1RRN2 32602580
    54 6ydp:BE (3.0) BS01 rna ? GO:0003735 ... A0A140UHW4 32602580
    55 6ydp:BF (3.0) BS01 rna ? GO:0003735 ... A0A287B9C4 32602580
    56 6ydp:BI (3.0) BS01 rna ? GO:0003735 ... I3LR45 32602580
    57 6ydp:BJ (3.0) BS01 peptide ? GO:0005840 ... F1RWJ0 32602580
    58 6ydp:BJ (3.0) BS02 peptide ? GO:0005840 ... F1RWJ0 32602580
    59 6ydp:BJ (3.0) BS03 peptide ? GO:0005840 ... F1RWJ0 32602580
    60 6ydp:BJ (3.0) BS04 peptide ? GO:0005840 ... F1RWJ0 32602580
    61 6ydp:BJ (3.0) BS05 peptide ? GO:0005840 ... F1RWJ0 32602580
    62 6ydp:BJ (3.0) BS06 rna ? GO:0005840 ... F1RWJ0 32602580
    63 6ydp:BK (3.0) BS01 rna ? GO:0003735 ... F1RU54 32602580
    64 6ydp:BN (3.0) BS01 rna ? GO:0003729 ... K7GP19 32602580
    65 6ydp:BO (3.0) BS01 rna ? GO:0003735 ... A0A287BMZ6 32602580
    66 6ydp:BP (3.0) BS01 rna N/A GO:0003735 ... N/A 32602580
    67 6ydp:BP (3.0) BS02 MG N/A GO:0003735 ... N/A 32602580
    68 6ydp:BQ (3.0) BS01 rna ? GO:0003735 ... F1RI89 32602580
    69 6ydp:BQ (3.0) BS02 MG ? GO:0003735 ... F1RI89 32602580
    70 6ydp:BR (3.0) BS01 rna ? GO:0003735 ... F1RMQ4 32602580
    71 6ydp:BS (3.0) BS01 rna ? GO:0003735 ... A0A286ZNK1 32602580
    72 6ydp:BS (3.0) BS02 rna ? GO:0003735 ... A0A286ZNK1 32602580
    73 6ydp:BT (3.0) BS01 rna ? GO:0003735 ... I3LNJ0 32602580
    74 6ydp:BU (3.0) BS01 rna ? GO:0003735 ... A0A286ZU56 32602580
    75 6ydp:BV (3.0) BS01 rna ? GO:0003723 ... F1RY70 32602580
    76 6ydp:BW (3.0) BS01 rna ? GO:0003735 ... A0A4X1TXR4 32602580
    77 6ydp:BX (3.0) BS01 rna N/A GO:0003735 ... N/A 32602580
    78 6ydp:BY (3.0) BS01 rna ? GO:0003723 ... F1RHJ1 32602580
    79 6ydp:Ba (3.0) BS01 rna ? GO:0003735 ... A0A287BIV6 32602580
    80 6ydp:Bb (3.0) BS01 rna ? GO:0005739 ... F1RW03 32602580
    81 6ydp:Bb (3.0) BS02 rna ? GO:0005739 ... F1RW03 32602580
    82 6ydp:Bd (3.0) BS01 rna ? GO:0005739 ... A0A286ZP98 32602580
    83 6ydp:Bd (3.0) BS02 rna ? GO:0005739 ... A0A286ZP98 32602580
    84 6ydp:Be (3.0) BS01 rna ? GO:0003735 ... A0A8D1F1K9 32602580
    85 6ydp:Be (3.0) BS02 MG ? GO:0003735 ... A0A8D1F1K9 32602580
    86 6ydp:Bf (3.0) BS01 rna ? GO:0005739 ... A0A287BQA1 32602580
    87 6ydp:Bg (3.0) BS01 rna ? GO:0003735 ... F1S8U4 32602580
    88 6ydp:Bh (3.0) BS01 rna ? GO:0003723 ... F1SR64 32602580
    89 6ydp:Bi (3.0) BS01 rna ? GO:0005739 ... I3LGM5 32602580
    90 6ydp:Bj (3.0) BS01 rna ? GO:0003735 ... F1SRT0 32602580
    91 6ydp:Bk (3.0) BS01 rna ? GO:0005739 ... A0A480J9Z6 32602580
    92 6ydp:Bk (3.0) BS02 rna ? GO:0005739 ... A0A480J9Z6 32602580
    93 6ydp:Bl (3.0) BS01 rna ? GO:0003735 ... A0A0R4J8D6 32602580
    94 6ydp:Bn (3.0) BS01 rna ? GO:0003735 ... A0A8D1P1C8 32602580
    95 6ydp:Bo (3.0) BS01 rna ? GO:0003735 ... F1S9B7 32602580
    96 6ydp:Bp (3.0) BS01 rna N/A N/A N/A 32602580
    97 6ydp:Bq (3.0) BS01 rna ? N/A I3LN63 32602580
    98 6ydp:Bt (3.0) BS01 rna ? GO:0003735 ... A0A287BP93 32602580
    99 6ydp:Bt (3.0) BS02 MG ? GO:0003735 ... A0A287BP93 32602580
    100 6ydp:Bv (3.0) BS01 rna ? GO:0005634 ... A0A286ZXA6 32602580
    101 6ydp:Bw (3.0) BS01 rna ? GO:0003735 ... A0A480QIM3 32602580
    102 6ydp:Bx (3.0) BS01 rna ? GO:0003735 ... F1RRH6 32602580
    103 6ydp:Bx (3.0) BS02 ZN ? GO:0003735 ... F1RRH6 32602580
    104 6ydp:CL (3.0) BS01 peptide ? GO:0003735 ... A0A4X1U6S6 32602580
    105 6ydp:CL (3.0) BS02 peptide ? GO:0003735 ... A0A4X1U6S6 32602580
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218