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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wde:B (3.0) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    2 6wde:C (3.0) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    3 6wde:D (3.0) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    4 6wde:E (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    5 6wde:F (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    6 6wde:G (3.0) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    7 6wde:H (3.0) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    8 6wde:I (3.0) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    9 6wde:J (3.0) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    10 6wde:K (3.0) BS01 rna ? GO:0003735 ... P02358 32612237
    11 6wde:L (3.0) BS01 rna ? GO:0003723 ... P02359 32612237
    12 6wde:L (3.0) BS02 rna ? GO:0003723 ... P02359 32612237
    13 6wde:L (3.0) BS03 rna ? GO:0003723 ... P02359 32612237
    14 6wde:M (3.0) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    15 6wde:N (3.0) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    16 6wde:N (3.0) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    17 6wde:O (3.0) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    18 6wde:P (3.0) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    19 6wde:Q (3.0) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    20 6wde:R (3.0) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    21 6wde:R (3.0) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    22 6wde:S (3.0) BS01 rna ? GO:0000028 ... P0AG59 32612237
    23 6wde:T (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    24 6wde:T (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    25 6wde:U (3.0) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    26 6wde:V (3.0) BS01 rna ? GO:0000028 ... P0AG63 32612237
    27 6wde:W (3.0) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    28 6wde:X (3.0) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    29 6wde:Y (3.0) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    30 6wde:Z (3.0) BS01 rna ? GO:0000028 ... P68679 32612237
    31 6wde:Z (3.0) BS02 rna ? GO:0000028 ... P68679 32612237
    32 6wde:a (3.0) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    33 6wde:a (3.0) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    34 6wde:b (3.0) BS01 rna ? GO:0000027 ... P60422 32612237
    35 6wde:b (3.0) BS02 rna ? GO:0000027 ... P60422 32612237
    36 6wde:c (3.0) BS01 rna ? GO:0000027 ... P60438 32612237
    37 6wde:d (3.0) BS01 rna ? GO:0001070 ... P60723 32612237
    38 6wde:e (3.0) BS01 rna ? GO:0000027 ... P62399 32612237
    39 6wde:e (3.0) BS02 rna ? GO:0000027 ... P62399 32612237
    40 6wde:e (3.0) BS03 rna ? GO:0000027 ... P62399 32612237
    41 6wde:f (3.0) BS01 rna ? GO:0000027 ... P0AG55 32612237
    42 6wde:g (3.0) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    43 6wde:h (3.0) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    44 6wde:i (3.0) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    45 6wde:j (3.0) BS01 rna ? GO:0002181 ... P0AA10 32612237
    46 6wde:k (3.0) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    47 6wde:k (3.0) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    48 6wde:l (3.0) BS01 rna ? GO:0002181 ... P02413 32612237
    49 6wde:m (3.0) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    50 6wde:m (3.0) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    51 6wde:m (3.0) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    52 6wde:n (3.0) BS01 rna ? GO:0000027 ... P0AG44 32612237
    53 6wde:o (3.0) BS01 rna ? GO:0002181 ... P0C018 32612237
    54 6wde:o (3.0) BS02 rna ? GO:0002181 ... P0C018 32612237
    55 6wde:p (3.0) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    56 6wde:p (3.0) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    57 6wde:q (3.0) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    58 6wde:r (3.0) BS01 rna ? GO:0002181 ... P0AG48 32612237
    59 6wde:s (3.0) BS01 rna ? GO:0002181 ... P61175 32612237
    60 6wde:t (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    61 6wde:u (3.0) BS01 rna ? GO:0000027 ... P60624 32612237
    62 6wde:v (3.0) BS01 rna ? GO:0000027 ... P68919 32612237
    63 6wde:w (3.0) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    64 6wde:w (3.0) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    65 6wde:x (3.0) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    66 6wde:y (3.0) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    67 6wde:z (3.0) BS01 rna ? GO:0000027 ... P0AG51 32612237
    68 6wde:z (3.0) BS02 rna ? GO:0000027 ... P0AG51 32612237
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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