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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wdb:B (4.0) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    2 6wdb:C (4.0) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    3 6wdb:D (4.0) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    4 6wdb:E (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    5 6wdb:F (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    6 6wdb:G (4.0) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    7 6wdb:H (4.0) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    8 6wdb:I (4.0) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    9 6wdb:J (4.0) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    10 6wdb:K (4.0) BS01 rna ? GO:0003735 ... P02358 32612237
    11 6wdb:L (4.0) BS01 rna ? GO:0003723 ... P02359 32612237
    12 6wdb:L (4.0) BS02 rna ? GO:0003723 ... P02359 32612237
    13 6wdb:M (4.0) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    14 6wdb:N (4.0) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    15 6wdb:O (4.0) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    16 6wdb:P (4.0) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    17 6wdb:Q (4.0) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    18 6wdb:R (4.0) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    19 6wdb:S (4.0) BS01 rna ? GO:0000028 ... P0AG59 32612237
    20 6wdb:T (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    21 6wdb:T (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    22 6wdb:U (4.0) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    23 6wdb:V (4.0) BS01 rna ? GO:0000028 ... P0AG63 32612237
    24 6wdb:W (4.0) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    25 6wdb:X (4.0) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    26 6wdb:Y (4.0) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    27 6wdb:Z (4.0) BS01 rna ? GO:0000028 ... P68679 32612237
    28 6wdb:a (4.0) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    29 6wdb:b (4.0) BS01 rna ? GO:0000027 ... P60422 32612237
    30 6wdb:b (4.0) BS02 rna ? GO:0000027 ... P60422 32612237
    31 6wdb:c (4.0) BS01 rna ? GO:0000027 ... P60438 32612237
    32 6wdb:d (4.0) BS01 rna ? GO:0001070 ... P60723 32612237
    33 6wdb:e (4.0) BS01 rna ? GO:0000027 ... P62399 32612237
    34 6wdb:e (4.0) BS02 rna ? GO:0000027 ... P62399 32612237
    35 6wdb:e (4.0) BS03 rna ? GO:0000027 ... P62399 32612237
    36 6wdb:f (4.0) BS01 rna ? GO:0000027 ... P0AG55 32612237
    37 6wdb:g (4.0) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    38 6wdb:h (4.0) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    39 6wdb:i (4.0) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    40 6wdb:j (4.0) BS01 rna ? GO:0002181 ... P0AA10 32612237
    41 6wdb:k (4.0) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    42 6wdb:k (4.0) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    43 6wdb:l (4.0) BS01 rna ? GO:0002181 ... P02413 32612237
    44 6wdb:m (4.0) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    45 6wdb:m (4.0) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    46 6wdb:m (4.0) BS03 rna ? GO:0000027 ... P0ADY7 32612237
    47 6wdb:n (4.0) BS01 rna ? GO:0000027 ... P0AG44 32612237
    48 6wdb:o (4.0) BS01 rna ? GO:0002181 ... P0C018 32612237
    49 6wdb:o (4.0) BS02 rna ? GO:0002181 ... P0C018 32612237
    50 6wdb:p (4.0) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    51 6wdb:p (4.0) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    52 6wdb:q (4.0) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    53 6wdb:r (4.0) BS01 rna ? GO:0002181 ... P0AG48 32612237
    54 6wdb:s (4.0) BS01 rna ? GO:0002181 ... P61175 32612237
    55 6wdb:t (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    56 6wdb:u (4.0) BS01 rna ? GO:0000027 ... P60624 32612237
    57 6wdb:v (4.0) BS01 rna ? GO:0000027 ... P68919 32612237
    58 6wdb:v (4.0) BS02 rna ? GO:0000027 ... P68919 32612237
    59 6wdb:w (4.0) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    60 6wdb:w (4.0) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    61 6wdb:x (4.0) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    62 6wdb:x (4.0) BS02 rna ? GO:0000027 ... P0A7M2 32612237
    63 6wdb:y (4.0) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    64 6wdb:z (4.0) BS01 rna ? GO:0000027 ... P0AG51 32612237
    65 6wdb:z (4.0) BS02 rna ? GO:0000027 ... P0AG51 32612237

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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