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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 359 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6u42:J7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    202 6u42:J8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    203 6u42:J9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    204 6u42:K0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    205 6u42:K1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    206 6u42:K3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    207 6u42:K4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    208 6u42:K5 (3.4) BS01 MG 3.6.5.- GO:0005200 ... P09204 31668805
    209 6u42:K5 (3.4) BS02 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    210 6u42:K6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    211 6u42:K7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    212 6u42:K8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    213 6u42:K9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    214 6u42:L0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    215 6u42:L1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    216 6u42:L2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    217 6u42:L3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    218 6u42:L4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    219 6u42:L5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    220 6u42:L6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    221 6u42:L7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    222 6u42:L9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    223 6u42:M0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    224 6u42:M1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    225 6u42:M2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    226 6u42:M3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    227 6u42:M4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    228 6u42:M5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    229 6u42:M6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    230 6u42:M7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    231 6u42:M8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    232 6u42:M9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    233 6u42:N0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    234 6u42:N1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    235 6u42:N2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    236 6u42:N3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    237 6u42:N5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    238 6u42:N6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    239 6u42:N7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    240 6u42:N8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    241 6u42:N9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    242 6u42:O0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    243 6u42:O1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    244 6u42:O2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    245 6u42:O3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    246 6u42:O4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    247 6u42:O5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    248 6u42:O6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    249 6u42:O7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    250 6u42:O8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    251 6u42:O9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    252 6u42:P3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    253 6u42:P4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    254 6u42:P5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    255 6u42:P6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    256 6u42:P7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    257 6u42:P8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    258 6u42:P9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    259 6u42:Q0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    260 6u42:Q1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    261 6u42:Q2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    262 6u42:Q3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    263 6u42:Q4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    264 6u42:Q5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    265 6u42:Q6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    266 6u42:Q8 (3.4) BS01 peptide ? GO:0003924 ... P04690 31668805
    267 6u42:Q8 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    268 6u42:Q9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    269 6u42:R0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    270 6u42:R1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    271 6u42:R2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    272 6u42:R3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    273 6u42:R4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    274 6u42:R5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    275 6u42:R6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    276 6u42:R7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    277 6u42:R8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    278 6u42:R9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    279 6u42:S0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    280 6u42:S1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    281 6u42:S2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    282 6u42:S4 (3.4) BS01 peptide ? GO:0003924 ... P04690 31668805
    283 6u42:S4 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    284 6u42:S5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    285 6u42:S6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    286 6u42:S7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    287 6u42:S8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    288 6u42:S9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    289 6u42:T0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    290 6u42:T1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    291 6u42:T2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    292 6u42:T3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    293 6u42:T4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    294 6u42:T5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    295 6u42:T6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    296 6u42:T7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    297 6u42:T8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    298 6u42:U1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    299 6u42:U2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    300 6u42:U3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    301 6u42:U4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    302 6u42:U5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    303 6u42:U6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    304 6u42:U7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    305 6u42:U8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    306 6u42:U9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    307 6u42:V0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    308 6u42:V1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    309 6u42:V2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    310 6u42:V3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    311 6u42:V4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    312 6u42:V6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    313 6u42:V7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    314 6u42:V8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    315 6u42:V9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    316 6u42:W0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    317 6u42:W1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    318 6u42:W2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    319 6u42:W3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    320 6u42:W4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    321 6u42:W5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    322 6u42:W6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    323 6u42:W7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    324 6u42:W8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    325 6u42:W9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    326 6u42:X0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    327 6u42:X2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    328 6u42:X3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    329 6u42:X4 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    330 6u42:X4 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    331 6u42:X5 (3.4) BS01 MG 3.6.5.- GO:0005200 ... P09204 31668805
    332 6u42:X5 (3.4) BS02 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    333 6u42:X6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    334 6u42:X7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    335 6u42:X8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    336 6u42:X9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    337 6u42:Y0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    338 6u42:Y1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    339 6u42:Y2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    340 6u42:Y3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    341 6u42:Y4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    342 6u42:Y5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    343 6u42:Y6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    344 6u42:Y8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    345 6u42:Y9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    346 6u42:Z0 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    347 6u42:Z0 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    348 6u42:Z1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    349 6u42:Z2 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    350 6u42:Z2 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    351 6u42:Z3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    352 6u42:Z4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    353 6u42:Z5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    354 6u42:Z6 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    355 6u42:Z6 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    356 6u42:Z7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    357 6u42:Z8 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    358 6u42:Z8 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    359 6u42:Z9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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