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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6tbv:L021 (2.7) BS01 rna ? GO:0000027 ... P60422 32094585
    2 6tbv:L031 (2.7) BS01 rna ? GO:0000027 ... P60438 32094585
    3 6tbv:L031 (2.7) BS02 MG ? GO:0000027 ... P60438 32094585
    4 6tbv:L041 (2.7) BS01 rna ? GO:0001070 ... P60723 32094585
    5 6tbv:L051 (2.7) BS01 rna ? GO:0000027 ... P62399 32094585
    6 6tbv:L051 (2.7) BS02 rna ? GO:0000027 ... P62399 32094585
    7 6tbv:L051 (2.7) BS03 rna ? GO:0000027 ... P62399 32094585
    8 6tbv:L061 (2.7) BS01 rna ? GO:0000027 ... P0AG55 32094585
    9 6tbv:L091 (2.7) BS01 rna ? GO:0002181 ... P0A7R1 32094585
    10 6tbv:L131 (2.7) BS01 rna ? GO:0002181 ... P0AA10 32094585
    11 6tbv:L141 (2.7) BS01 rna ? GO:0002181 ... P0ADY3 32094585
    12 6tbv:L141 (2.7) BS02 rna ? GO:0002181 ... P0ADY3 32094585
    13 6tbv:L151 (2.7) BS01 rna ? GO:0002181 ... P02413 32094585
    14 6tbv:L151 (2.7) BS02 MG ? GO:0002181 ... P02413 32094585
    15 6tbv:L161 (2.7) BS01 rna ? GO:0000027 ... P0ADY7 32094585
    16 6tbv:L161 (2.7) BS02 rna ? GO:0000027 ... P0ADY7 32094585
    17 6tbv:L171 (2.7) BS01 rna ? GO:0000027 ... P0AG44 32094585
    18 6tbv:L181 (2.7) BS01 rna ? GO:0002181 ... P0C018 32094585
    19 6tbv:L181 (2.7) BS02 rna ? GO:0002181 ... P0C018 32094585
    20 6tbv:L191 (2.7) BS01 rna ? GO:0000027 ... P0A7K6 32094585
    21 6tbv:L191 (2.7) BS02 rna ? GO:0000027 ... P0A7K6 32094585
    22 6tbv:L201 (2.7) BS01 rna ? GO:0000027 ... P0A7L3 32094585
    23 6tbv:L211 (2.7) BS01 rna ? GO:0002181 ... P0AG48 32094585
    24 6tbv:L221 (2.7) BS01 rna ? GO:0002181 ... P61175 32094585
    25 6tbv:L231 (2.7) BS01 rna ? GO:0000027 ... P0ADZ0 32094585
    26 6tbv:L241 (2.7) BS01 rna ? GO:0000027 ... P60624 32094585
    27 6tbv:L251 (2.7) BS01 rna ? GO:0000027 ... P68919 32094585
    28 6tbv:L271 (2.7) BS01 rna ? GO:0000027 ... P0A7L8 32094585
    29 6tbv:L271 (2.7) BS02 rna ? GO:0000027 ... P0A7L8 32094585
    30 6tbv:L281 (2.7) BS01 rna ? GO:0000027 ... P0A7M2 32094585
    31 6tbv:L291 (2.7) BS01 rna ? GO:0000027 ... P0A7M6 32094585
    32 6tbv:L301 (2.7) BS01 rna ? GO:0000027 ... P0AG51 32094585
    33 6tbv:L311 (2.7) BS01 rna ? GO:0002181 ... P0A7M9 32094585
    34 6tbv:L311 (2.7) BS02 ZN ? GO:0002181 ... P0A7M9 32094585
    35 6tbv:L321 (2.7) BS01 rna ? GO:0000027 ... P0A7N4 32094585
    36 6tbv:L331 (2.7) BS01 rna ? GO:0000027 ... P0A7N9 32094585
    37 6tbv:L341 (2.7) BS01 rna ? GO:0002181 ... P0A7P5 32094585
    38 6tbv:L351 (2.7) BS01 rna ? GO:0002181 ... P0A7Q1 32094585
    39 6tbv:L361 (2.7) BS01 rna ? GO:0002181 ... P0A7Q6 32094585
    40 6tbv:L361 (2.7) BS02 ZN ? GO:0002181 ... P0A7Q6 32094585
    41 6tbv:S021 (2.7) BS01 rna ? GO:0000028 ... P0A7V0 32094585
    42 6tbv:S021 (2.7) BS02 ZN ? GO:0000028 ... P0A7V0 32094585
    43 6tbv:S031 (2.7) BS01 rna ? GO:0000028 ... P0A7V3 32094585
    44 6tbv:S041 (2.7) BS01 rna ? GO:0000028 ... P0A7V8 32094585
    45 6tbv:S051 (2.7) BS01 rna ? GO:0000028 ... P0A7W1 32094585
    46 6tbv:S061 (2.7) BS01 rna ? GO:0002181 ... P02358 32094585
    47 6tbv:S071 (2.7) BS01 rna ? GO:0000028 ... P02359 32094585
    48 6tbv:S071 (2.7) BS02 rna ? GO:0000028 ... P02359 32094585
    49 6tbv:S081 (2.7) BS01 rna ? GO:0000028 ... P0A7W7 32094585
    50 6tbv:S091 (2.7) BS01 rna ? GO:0000049 ... P0A7X3 32094585
    51 6tbv:S101 (2.7) BS01 rna ? GO:0000049 ... P0A7R5 32094585
    52 6tbv:S111 (2.7) BS01 rna ? GO:0002181 ... P0A7R9 32094585
    53 6tbv:S121 (2.7) BS01 rna ? GO:0000049 ... P0A7S3 32094585
    54 6tbv:S131 (2.7) BS01 rna ? GO:0000049 ... P0A7S9 32094585
    55 6tbv:S141 (2.7) BS01 rna ? GO:0003735 ... P0AG59 32094585
    56 6tbv:S151 (2.7) BS01 rna ? GO:0000028 ... P0ADZ4 32094585
    57 6tbv:S151 (2.7) BS02 rna ? GO:0000028 ... P0ADZ4 32094585
    58 6tbv:S161 (2.7) BS01 rna ? GO:0000028 ... P0A7T3 32094585
    59 6tbv:S171 (2.7) BS01 rna ? GO:0000028 ... P0AG63 32094585
    60 6tbv:S181 (2.7) BS01 rna ? GO:0002181 ... P0A7T7 32094585
    61 6tbv:S191 (2.7) BS01 rna ? GO:0000028 ... P0A7U3 32094585
    62 6tbv:S201 (2.7) BS01 rna ? GO:0000028 ... P0A7U7 32094585
    63 6tbv:S211 (2.7) BS01 rna ? GO:0000028 ... P68679 32094585
    64 6tbv:SPE1 (2.7) BS01 rna ? GO:0006417 ... P0DTV7 32094585
    65 6tbv:SPE1 (2.7) BS02 ORN ? GO:0006417 ... P0DTV7 32094585
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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