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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6sw9:0 (4.2) BS01 rna ? GO:0005840 ... Q8U232 32029867
    2 6sw9:3 (4.2) BS01 rna ? GO:0001682 ... P62008 32029867
    3 6sw9:6 (4.2) BS01 rna ? GO:0003723 ... Q9V138 32029867
    4 6sw9:6 (4.2) BS02 rna ? GO:0003723 ... Q9V138 32029867
    5 6sw9:7 (4.2) BS01 rna 3.6.5.3 GO:0000049 ... Q980A5 32029867
    6 6sw9:7 (4.2) BS02 rna 3.6.5.3 GO:0000049 ... Q980A5 32029867
    7 6sw9:7 (4.2) BS03 MET 3.6.5.3 GO:0000049 ... Q980A5 32029867
    8 6sw9:7 (4.2) BS04 GNP 3.6.5.3 GO:0000049 ... Q980A5 32029867
    9 6sw9:7 (4.2) BS05 MG 3.6.5.3 GO:0000049 ... Q980A5 32029867
    10 6sw9:A (4.2) BS01 rna ? GO:0003735 ... Q9V2K7 32029867
    11 6sw9:B (4.2) BS01 rna ? GO:0000028 ... Q9V191 32029867
    12 6sw9:C (4.2) BS01 ZN ? N/A G8ZFK7 32029867
    13 6sw9:C (4.2) BS02 ZN ? N/A G8ZFK7 32029867
    14 6sw9:D (4.2) BS01 rna ? GO:0003723 ... P61992 32029867
    15 6sw9:E (4.2) BS01 rna ? GO:0003723 ... Q9V1U8 32029867
    16 6sw9:F (4.2) BS01 rna ? GO:0003723 ... Q9V1V5 32029867
    17 6sw9:F (4.2) BS02 ZN ? GO:0003723 ... Q9V1V5 32029867
    18 6sw9:G (4.2) BS01 rna ? GO:0003735 ... Q9UYS3 32029867
    19 6sw9:H (4.2) BS01 rna ? GO:0000028 ... Q9V109 32029867
    20 6sw9:I (4.2) BS01 rna ? GO:0003735 ... Q9V1V0 32029867
    21 6sw9:J (4.2) BS01 rna ? GO:0000462 ... Q9UZL4 32029867
    22 6sw9:K (4.2) BS01 rna ? GO:0000462 ... Q9V195 32029867
    23 6sw9:L (4.2) BS01 rna ? GO:0000049 ... Q9V0V6 32029867
    24 6sw9:M (4.2) BS01 rna ? GO:0003735 ... P62010 32029867
    25 6sw9:N (4.2) BS01 rna ? GO:0003735 ... P61994 32029867
    26 6sw9:O (4.2) BS01 rna ? GO:0003676 ... Q9V1A0 32029867
    27 6sw9:P (4.2) BS01 rna ? GO:0003723 ... P62012 32029867
    28 6sw9:P (4.2) BS02 ZN ? GO:0003723 ... P62012 32029867
    29 6sw9:Q (4.2) BS01 rna ? GO:0003735 ... Q9V2K9 32029867
    30 6sw9:R (4.2) BS01 rna ? GO:0003735 ... Q9V1U5 32029867
    31 6sw9:R (4.2) BS02 ZN ? GO:0003735 ... Q9V1U5 32029867
    32 6sw9:S (4.2) BS01 rna ? GO:0003735 ... Q9V0G0 32029867
    33 6sw9:T (4.2) BS01 rna ? GO:0000028 ... Q9V1T9 32029867
    34 6sw9:U (4.2) BS01 rna ? GO:0000028 ... Q9V0G8 32029867
    35 6sw9:V (4.2) BS01 rna ? GO:0003735 ... Q9UY20 32029867
    36 6sw9:W (4.2) BS01 rna ? GO:0000028 ... Q9UXZ3 32029867
    37 6sw9:W (4.2) BS02 ZN ? GO:0000028 ... Q9UXZ3 32029867
    38 6sw9:X (4.2) BS01 rna ? GO:0000028 ... P61029 32029867
    39 6sw9:Y (4.2) BS01 rna ? GO:0003735 ... P61238 32029867
    40 6sw9:Z (4.2) BS01 rna ? GO:0003676 ... Q9V1U1 32029867
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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