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BioLiP
Download all results in tab-seperated text for 76 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rxv:CB (4.0) BS01 rna ? GO:0000494 ... G0SGY2 31378463
    2 6rxv:CC (4.0) BS01 rna ? GO:0030515 ... G0S2U4 31378463
    3 6rxv:CC (4.0) BS02 rna ? GO:0030515 ... G0S2U4 31378463
    4 6rxv:CD (4.0) BS01 rna ? GO:0005634 ... G0RYF6 31378463
    5 6rxv:CD (4.0) BS02 rna ? GO:0005634 ... G0RYF6 31378463
    6 6rxv:CE (4.0) BS01 rna ? GO:0000398 ... G0SGM0 31378463
    7 6rxv:CE (4.0) BS02 rna ? GO:0000398 ... G0SGM0 31378463
    8 6rxv:CF (4.0) BS01 rna ? GO:0000398 ... G0SGM0 31378463
    9 6rxv:CG (4.0) BS01 rna ? GO:0005634 ... G0SG51 31378463
    10 6rxv:CH (4.0) BS01 rna ? GO:0000479 ... G0S0B1 31378463
    11 6rxv:CI (4.0) BS01 rna ? GO:0000462 ... G0S445 31378463
    12 6rxv:CI (4.0) BS02 rna ? GO:0000462 ... G0S445 31378463
    13 6rxv:CI (4.0) BS03 GTP ? GO:0000462 ... G0S445 31378463
    14 6rxv:CI (4.0) BS04 MG ? GO:0000462 ... G0S445 31378463
    15 6rxv:CJ (4.0) BS01 rna ? GO:0003723 ... G0SDL4 31378463
    16 6rxv:CJ (4.0) BS02 rna ? GO:0003723 ... G0SDL4 31378463
    17 6rxv:CK (4.0) BS01 rna ? GO:0005730 ... G0SE90 31378463
    18 6rxv:CL (4.0) BS01 rna ? GO:0005634 ... G0S9I7 31378463
    19 6rxv:CM (4.0) BS01 rna ? GO:0000462 ... G0RY94 31378463
    20 6rxv:CM (4.0) BS02 rna ? GO:0000462 ... G0RY94 31378463
    21 6rxv:CN (4.0) BS01 rna ? GO:0005730 ... G0SAY9 31378463
    22 6rxv:CP (4.0) BS01 rna ? GO:0003676 ... G0S3V7 31378463
    23 6rxv:CQ (4.0) BS01 rna ? GO:0003676 ... G0S3T2 31378463
    24 6rxv:CR (4.0) BS01 rna 2.3.1.- GO:0000049 ... G0S273 31378463
    25 6rxv:CT (4.0) BS01 rna ? GO:0003723 ... G0S4E3 31378463
    26 6rxv:CT (4.0) BS02 rna ? GO:0003723 ... G0S4E3 31378463
    27 6rxv:CU (4.0) BS01 rna ? GO:0000462 ... G0S5F1 31378463
    28 6rxv:CW (4.0) BS01 rna ? GO:0000462 ... G0S902 31378463
    29 6rxv:CY (4.0) BS01 rna ? GO:0000462 ... G0S7Z2 31378463
    30 6rxv:CZ (4.0) BS01 rna ? GO:0000462 ... G0SAJ6 31378463
    31 6rxv:Ca (4.0) BS01 rna ? GO:0003735 ... G0S7T8 31378463
    32 6rxv:Cb (4.0) BS01 rna ? GO:0003723 ... G0S1A6 31378463
    33 6rxv:Cc (4.0) BS01 rna ? GO:0000028 ... G0S1Z0 31378463
    34 6rxv:Cd (4.0) BS01 rna ? GO:0003735 ... G0RY43 31378463
    35 6rxv:Cf (4.0) BS01 rna ? GO:0000462 ... G0RY45 31378463
    36 6rxv:Cg (4.0) BS01 rna ? GO:0003723 ... G0S0Z4 31378463
    37 6rxv:Ch (4.0) BS01 rna ? GO:0003735 ... G0RZM9 31378463
    38 6rxv:Ci (4.0) BS01 rna ? GO:0000028 ... G0SFL1 31378463
    39 6rxv:Cj (4.0) BS01 rna ? GO:0000462 ... G0SBR7 31378463
    40 6rxv:Ck (4.0) BS01 rna ? GO:0003735 ... G0SF00 31378463
    41 6rxv:Cm (4.0) BS01 rna ? GO:0003735 ... G0SHI0 31378463
    42 6rxv:Cn (4.0) BS01 rna ? GO:0003735 ... G0RY17 31378463
    43 6rxv:Co (4.0) BS01 rna ? GO:0003735 ... P0CU28 31378463
    44 6rxv:Cp (4.0) BS01 rna ? GO:0000028 ... G0S9M9 31378463
    45 6rxv:UA (4.0) BS01 rna ? GO:0000028 ... G0SF93 31378463
    46 6rxv:UA (4.0) BS02 rna ? GO:0000028 ... G0SF93 31378463
    47 6rxv:UB (4.0) BS01 rna ? GO:0005634 ... G0SDW0 31378463
    48 6rxv:UB (4.0) BS02 rna ? GO:0005634 ... G0SDW0 31378463
    49 6rxv:UC (4.0) BS01 rna ? GO:0000462 ... G0S4H3 31378463
    50 6rxv:UD (4.0) BS01 rna ? GO:0000462 ... G0SCT7 31378463
    51 6rxv:UE (4.0) BS01 rna ? GO:0000462 ... G0RYX2 31378463
    52 6rxv:UF (4.0) BS01 rna ? GO:0000462 ... G0S387 31378463
    53 6rxv:UF (4.0) BS02 rna ? GO:0000462 ... G0S387 31378463
    54 6rxv:UG (4.0) BS01 rna ? GO:0000462 ... G0RZ99 31378463
    55 6rxv:UG (4.0) BS02 rna ? GO:0000462 ... G0RZ99 31378463
    56 6rxv:UH (4.0) BS01 rna ? GO:0005634 ... P0CT47 31378463
    57 6rxv:UJ (4.0) BS01 rna ? GO:0000462 ... G0S5L1 31378463
    58 6rxv:UK (4.0) BS01 rna ? GO:0005634 ... G0SF32 31378463
    59 6rxv:UK (4.0) BS02 rna ? GO:0005634 ... G0SF32 31378463
    60 6rxv:UL (4.0) BS01 rna ? GO:0005634 ... G0RZL9 31378463
    61 6rxv:UM (4.0) BS01 rna ? GO:0000472 ... G0SG95 31378463
    62 6rxv:UN (4.0) BS01 rna ? GO:0005634 ... G0S8Y4 31378463
    63 6rxv:UO (4.0) BS01 rna ? GO:0005634 ... G0SEI5 31378463
    64 6rxv:UP (4.0) BS01 rna ? GO:0006364 ... G0S612 31378463
    65 6rxv:UQ (4.0) BS01 rna ? GO:0003723 ... G0SCS8 31378463
    66 6rxv:UQ (4.0) BS02 rna ? GO:0003723 ... G0SCS8 31378463
    67 6rxv:UR (4.0) BS01 rna ? GO:0005730 ... G0SBN9 31378463
    68 6rxv:UR (4.0) BS02 rna ? GO:0005730 ... G0SBN9 31378463
    69 6rxv:US (4.0) BS01 rna ? GO:0005730 ... G0RZL4 31378463
    70 6rxv:UT (4.0) BS01 rna ? GO:0005730 ... G0SHP3 31378463
    71 6rxv:UU (4.0) BS01 rna ? GO:0006364 ... G0S872 31378463
    72 6rxv:UU (4.0) BS02 rna ? GO:0006364 ... G0S872 31378463
    73 6rxv:UX (4.0) BS01 rna N/A GO:0032040 ... N/A 31378463
    74 6rxv:UX (4.0) BS02 rna N/A GO:0032040 ... N/A 31378463
    75 6rxv:UX (4.0) BS03 ZN N/A GO:0032040 ... N/A 31378463
    76 6rxv:UZ (4.0) BS01 rna ? GO:0000470 ... G0S7X0 31378463
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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