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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ppk:C (4.4) BS01 rna ? GO:0002181 ... P42919 31665744
    2 6ppk:D (4.4) BS01 rna ? GO:0003735 ... P42920 31665744
    3 6ppk:E (4.4) BS01 rna ? GO:0003735 ... P42921 31665744
    4 6ppk:F (4.4) BS01 rna ? GO:0000049 ... P12877 31665744
    5 6ppk:F (4.4) BS02 rna ? GO:0000049 ... P12877 31665744
    6 6ppk:G (4.4) BS01 rna ? GO:0002181 ... P46898 31665744
    7 6ppk:J (4.4) BS01 rna ? GO:0003729 ... P70974 31665744
    8 6ppk:K (4.4) BS01 rna ? GO:0003735 ... P12875 31665744
    9 6ppk:L (4.4) BS01 rna ? GO:0003735 ... P19946 31665744
    10 6ppk:N (4.4) BS01 rna ? GO:0003735 ... P20277 31665744
    11 6ppk:O (4.4) BS01 rna ? GO:0003735 ... P46899 31665744
    12 6ppk:O (4.4) BS02 rna ? GO:0003735 ... P46899 31665744
    13 6ppk:P (4.4) BS01 rna ? GO:0003735 ... O31742 31665744
    14 6ppk:Q (4.4) BS01 rna ? GO:0000027 ... P55873 31665744
    15 6ppk:R (4.4) BS01 rna ? GO:0003723 ... P26908 31665744
    16 6ppk:S (4.4) BS01 rna ? GO:0003735 ... P42060 31665744
    17 6ppk:T (4.4) BS01 rna ? GO:0000027 ... P42924 31665744
    18 6ppk:U (4.4) BS01 rna ? GO:0003677 ... P0CI78 31665744
    19 6ppk:V (4.4) BS01 rna ? GO:0003735 ... P05657 31665744
    20 6ppk:W (4.4) BS01 rna ? GO:0003723 ... O31743 31665744
    21 6ppk:W (4.4) BS02 GNP ? GO:0003723 ... O31743 31665744
    22 6ppk:Y (4.4) BS01 rna ? GO:0003735 ... P12873 31665744
    23 6ppk:Z (4.4) BS01 rna ? GO:0003735 ... P19947 31665744
    24 6ppk:Z (4.4) BS02 rna ? GO:0003735 ... P19947 31665744
    25 6ppk:b (4.4) BS01 rna ? GO:0003735 ... O34687 31665744
    26 6ppk:d (4.4) BS01 rna ? GO:0003735 ... P05647 31665744
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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