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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ocz:H (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200 PDBbind: -logKd/Ki=8.52, IC50=0.003uM
    2 6ocz:H (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200 PDBbind: -logKd/Ki=8.52, IC50=0.003uM
    3 6ocz:I (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200 PDBbind: -logKd/Ki=8.52, IC50=0.003uM
    4 6ocz:I (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200 PDBbind: -logKd/Ki=8.52, IC50=0.003uM
    5 6ocz:J (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    6 6ocz:J (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    7 6ocz:K (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    8 6ocz:K (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    9 6ocz:L (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    10 6ocz:L (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    11 6ocz:M (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    12 6ocz:M (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    13 6ocz:N (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    14 6ocz:N (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    15 6ocz:V (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    16 6ocz:V (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    17 6ocz:W (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    18 6ocz:W (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    19 6ocz:X (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    20 6ocz:X (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    21 6ocz:Y (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200 PDBbind: -logKd/Ki=8.52, IC50=0.003uM
    22 6ocz:Y (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200 PDBbind: -logKd/Ki=8.52, IC50=0.003uM
    23 6ocz:Z (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    24 6ocz:Z (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    25 6ocz:a (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    26 6ocz:a (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    27 6ocz:b (2.65) BS01 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    28 6ocz:b (2.65) BS02 M6Y 3.4.25.1 GO:0004298 ... P9WHT9 31560200
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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