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BioLiP
Download all results in tab-seperated text for 253 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6o97:2Q (2.75) BS05 MG ? GO:0000049 ... P60489 30793894
    202 6o97:2Q (2.75) BS06 MG ? GO:0000049 ... P60489 30793894
    203 6o97:2R (2.75) BS01 rna ? GO:0003735 ... Q9Z9H5 30793894
    204 6o97:2S (2.75) BS01 rna ? GO:0003735 ... Q5SHQ4 30793894
    205 6o97:2S (2.75) BS02 rna ? GO:0003735 ... Q5SHQ4 30793894
    206 6o97:2T (2.75) BS01 rna ? GO:0003735 ... P60490 30793894
    207 6o97:2T (2.75) BS02 rna ? GO:0003735 ... P60490 30793894
    208 6o97:2T (2.75) BS03 MG ? GO:0003735 ... P60490 30793894
    209 6o97:2U (2.75) BS01 rna ? GO:0000027 ... P60491 30793894
    210 6o97:2U (2.75) BS02 MG ? GO:0000027 ... P60491 30793894
    211 6o97:2V (2.75) BS01 rna ? GO:0003723 ... P60492 30793894
    212 6o97:2V (2.75) BS02 MG ? GO:0003723 ... P60492 30793894
    213 6o97:2V (2.75) BS03 MG ? GO:0003723 ... P60492 30793894
    214 6o97:2W (2.75) BS01 rna ? GO:0003735 ... Q5SHP3 30793894
    215 6o97:2W (2.75) BS02 MG ? GO:0003735 ... Q5SHP3 30793894
    216 6o97:2X (2.75) BS01 rna ? GO:0000027 ... Q5SHP0 30793894
    217 6o97:2Y (2.75) BS01 rna ? GO:0003723 ... Q5SHP9 30793894
    218 6o97:2Y (2.75) BS02 ZN ? GO:0003723 ... Q5SHP9 30793894
    219 6o97:2Z (2.75) BS01 rna ? GO:0003723 ... Q5SHZ1 30793894
    220 6o97:2Z (2.75) BS02 rna ? GO:0003723 ... Q5SHZ1 30793894
    221 6o97:2b (2.75) BS01 rna ? GO:0003735 ... P80371 30793894
    222 6o97:2c (2.75) BS01 rna ? GO:0003676 ... P80372 30793894
    223 6o97:2d (2.75) BS01 rna ? GO:0003723 ... P80373 30793894
    224 6o97:2d (2.75) BS02 MG ? GO:0003723 ... P80373 30793894
    225 6o97:2d (2.75) BS03 SF4 ? GO:0003723 ... P80373 30793894
    226 6o97:2e (2.75) BS01 rna ? GO:0003723 ... Q5SHQ5 30793894
    227 6o97:2e (2.75) BS02 MG ? GO:0003723 ... Q5SHQ5 30793894
    228 6o97:2f (2.75) BS01 rna ? GO:0003735 ... Q5SLP8 30793894
    229 6o97:2f (2.75) BS02 MG ? GO:0003735 ... Q5SLP8 30793894
    230 6o97:2g (2.75) BS01 rna ? GO:0000028 ... P17291 30793894
    231 6o97:2g (2.75) BS02 rna ? GO:0000028 ... P17291 30793894
    232 6o97:2h (2.75) BS01 rna ? GO:0003735 ... P0DOY9 30793894
    233 6o97:2i (2.75) BS01 rna ? GO:0000049 ... P80374 30793894
    234 6o97:2i (2.75) BS02 rna ? GO:0000049 ... P80374 30793894
    235 6o97:2j (2.75) BS01 rna ? GO:0000049 ... Q5SHN7 30793894
    236 6o97:2k (2.75) BS01 rna ? GO:0003735 ... P80376 30793894
    237 6o97:2k (2.75) BS02 MG ? GO:0003735 ... P80376 30793894
    238 6o97:2l (2.75) BS01 rna ? GO:0000049 ... Q5SHN3 30793894
    239 6o97:2l (2.75) BS02 rna ? GO:0000049 ... Q5SHN3 30793894
    240 6o97:2m (2.75) BS01 rna ? GO:0000049 ... P80377 30793894
    241 6o97:2m (2.75) BS02 rna ? GO:0000049 ... P80377 30793894
    242 6o97:2n (2.75) BS01 rna ? GO:0003735 ... P0DOY6 30793894
    243 6o97:2n (2.75) BS02 ZN ? GO:0003735 ... P0DOY6 30793894
    244 6o97:2o (2.75) BS01 rna ? GO:0003735 ... Q5SJ76 30793894
    245 6o97:2o (2.75) BS02 rna ? GO:0003735 ... Q5SJ76 30793894
    246 6o97:2p (2.75) BS01 rna ? GO:0003735 ... Q5SJH3 30793894
    247 6o97:2q (2.75) BS01 rna ? GO:0003735 ... P0DOY7 30793894
    248 6o97:2q (2.75) BS02 MG ? GO:0003735 ... P0DOY7 30793894
    249 6o97:2q (2.75) BS03 MG ? GO:0003735 ... P0DOY7 30793894
    250 6o97:2r (2.75) BS01 rna ? GO:0003735 ... Q5SLQ0 30793894
    251 6o97:2r (2.75) BS02 MG ? GO:0003735 ... Q5SLQ0 30793894
    252 6o97:2s (2.75) BS01 rna ? GO:0000028 ... Q5SHP2 30793894
    253 6o97:2t (2.75) BS01 rna ? GO:0003723 ... P80380 30793894
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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