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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6o8w:0 (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKW1 33004869
    2 6o8w:1 (3.53) BS01 rna ? GO:0003735 ... A0A1B4XMV6 33004869
    3 6o8w:2 (3.53) BS01 rna ? GO:0003735 ... A0A1B4XMM2 33004869
    4 6o8w:2 (3.53) BS02 ZN ? GO:0003735 ... A0A1B4XMM2 33004869
    5 6o8w:3 (3.53) BS01 rna ? GO:0003735 ... A0A1B4XR98 33004869
    6 6o8w:3 (3.53) BS02 ZN ? GO:0003735 ... A0A1B4XR98 33004869
    7 6o8w:4 (3.53) BS01 rna ? GO:0003735 ... A0A1B4XSI4 33004869
    8 6o8w:5 (3.53) BS01 rna ? GO:0003735 ... A0A1B4XM73 33004869
    9 6o8w:6 (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKT9 33004869
    10 6o8w:6 (3.53) BS02 ZN ? GO:0003735 ... A0A1B4XKT9 33004869
    11 6o8w:C (3.53) BS01 rna ? GO:0002181 ... A0A1B4XKR6 33004869
    12 6o8w:D (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKR3 33004869
    13 6o8w:E (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKU7 33004869
    14 6o8w:F (3.53) BS01 rna ? GO:0000049 ... A0A1B4XKS2 33004869
    15 6o8w:F (3.53) BS02 rna ? GO:0000049 ... A0A1B4XKS2 33004869
    16 6o8w:G (3.53) BS01 rna ? GO:0002181 ... A0A1B4XKU3 33004869
    17 6o8w:K (3.53) BS01 rna ? GO:0003729 ... A0A1B4XSB2 33004869
    18 6o8w:L (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKS1 33004869
    19 6o8w:L (3.53) BS02 rna ? GO:0003735 ... A0A1B4XKS1 33004869
    20 6o8w:M (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKT1 33004869
    21 6o8w:N (3.53) BS01 rna ? GO:0000049 ... A0A1B4XKU1 33004869
    22 6o8w:O (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKX1 33004869
    23 6o8w:P (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKS7 33004869
    24 6o8w:P (3.53) BS02 rna ? GO:0003735 ... A0A1B4XKS7 33004869
    25 6o8w:Q (3.53) BS01 rna ? GO:0003735 ... A0A1B4XPL8 33004869
    26 6o8w:Q (3.53) BS02 rna ? GO:0003735 ... A0A1B4XPL8 33004869
    27 6o8w:R (3.53) BS01 rna ? GO:0000027 ... A0A1B4XM76 33004869
    28 6o8w:S (3.53) BS01 rna ? GO:0003723 ... A0A1B4XMC1 33004869
    29 6o8w:T (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKT6 33004869
    30 6o8w:U (3.53) BS01 rna ? GO:0000027 ... A0A1B4XKR7 33004869
    31 6o8w:V (3.53) BS01 rna ? GO:0003723 ... A0A1B4XKV5 33004869
    32 6o8w:W (3.53) BS01 rna N/A GO:0003735 ... N/A 33004869
    33 6o8w:X (3.53) BS01 rna ? GO:0003735 ... A0A1B4XMB1 33004869
    34 6o8w:X (3.53) BS02 rna ? GO:0003735 ... A0A1B4XMB1 33004869
    35 6o8w:Y (3.53) BS01 rna ? GO:0003735 ... A0A1B4XRZ8 33004869
    36 6o8w:Z (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKV0 33004869
    37 6o8w:c (3.53) BS01 rna ? GO:0003676 ... A0A1B4XKR8 33004869
    38 6o8w:d (3.53) BS01 rna ? GO:0003723 ... A0A1B4XRV7 33004869
    39 6o8w:e (3.53) BS01 rna ? GO:0003723 ... A0A1B4XKW0 33004869
    40 6o8w:f (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKB6 33004869
    41 6o8w:g (3.53) BS01 rna ? GO:0000028 ... A0A1B4XKQ3 33004869
    42 6o8w:h (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKS6 33004869
    43 6o8w:i (3.53) BS01 rna ? GO:0003723 ... A0A1B4XSA2 33004869
    44 6o8w:j (3.53) BS01 rna ? GO:0000049 ... A0A1B4XKR5 33004869
    45 6o8w:k (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKV1 33004869
    46 6o8w:l (3.53) BS01 rna ? GO:0000049 ... A0A1B4XKQ7 33004869
    47 6o8w:m (3.53) BS01 rna ? GO:0000049 ... A0A1B4XKT7 33004869
    48 6o8w:n (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKT0 33004869
    49 6o8w:n (3.53) BS02 ZN ? GO:0003735 ... A0A1B4XKT0 33004869
    50 6o8w:o (3.53) BS01 rna ? GO:0003735 ... A0A1B4XRW3 33004869
    51 6o8w:o (3.53) BS02 rna ? GO:0003735 ... A0A1B4XRW3 33004869
    52 6o8w:p (3.53) BS01 rna ? GO:0003735 ... A0A1B4XP69 33004869
    53 6o8w:q (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKS3 33004869
    54 6o8w:r (3.53) BS01 rna ? GO:0003735 ... A0A1B4XKB3 33004869
    55 6o8w:s (3.53) BS01 rna ? GO:0003723 ... A0A1B4XKS0 33004869
    56 6o8w:t (3.53) BS01 rna ? GO:0003723 ... A0A1B4XQJ7 33004869

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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