Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6o7k:1 (4.2) BS01 rna ? GO:0003735 ... P0A7T7 31108498
    2 6o7k:2 (4.2) BS01 rna ? GO:0003735 ... P68679 31108498
    3 6o7k:3 (4.2) BS01 rna ? GO:0000028 ... P0A7U7 31108498
    4 6o7k:5 (4.2) BS01 rna ? GO:0003723 ... Q5SHR1 31108498
    5 6o7k:P (4.2) BS01 rna ? GO:0000028 ... P0AG63 31108498
    6 6o7k:f (4.2) BS01 rna ? GO:0003743 ... P0A705 31108498
    7 6o7k:f (4.2) BS02 rna ? GO:0003743 ... P0A705 31108498
    8 6o7k:h (4.2) BS01 rna ? GO:0003676 ... P0A7V3 31108498
    9 6o7k:j (4.2) BS01 rna ? GO:0000028 ... P0A7V0 31108498
    10 6o7k:k (4.2) BS01 rna ? GO:0000028 ... P0A7W1 31108498
    11 6o7k:l (4.2) BS01 rna ? GO:0000028 ... P0A7V8 31108498
    12 6o7k:m (4.2) BS01 rna ? GO:0003723 ... P02359 31108498
    13 6o7k:n (4.2) BS01 rna ? GO:0003735 ... P02358 31108498
    14 6o7k:o (4.2) BS01 rna ? GO:0000049 ... P0A7X3 31108498
    15 6o7k:o (4.2) BS02 rna ? GO:0000049 ... P0A7X3 31108498
    16 6o7k:p (4.2) BS01 rna ? GO:0000028 ... P0A7W7 31108498
    17 6o7k:q (4.2) BS01 rna ? GO:0002181 ... P0A7R9 31108498
    18 6o7k:r (4.2) BS01 rna ? GO:0000049 ... P0A7R5 31108498
    19 6o7k:s (4.2) BS01 rna ? GO:0000049 ... P0A7S9 31108498
    20 6o7k:t (4.2) BS01 rna ? GO:0000049 ... P0A7S3 31108498
    21 6o7k:u (4.2) BS01 rna ? GO:0000028 ... P0ADZ4 31108498
    22 6o7k:w (4.2) BS01 rna ? GO:0000028 ... P0AG59 31108498
    23 6o7k:y (4.2) BS01 rna ? GO:0000028 ... P0A7T3 31108498
    24 6o7k:z (4.2) BS01 rna ? GO:0003723 ... P0A7U3 31108498
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218