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BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6mte:A (3.4) BS01 rna ? GO:0002181 ... G1TT27 30355441
    2 6mte:A (3.4) BS02 rna ? GO:0002181 ... G1TT27 30355441
    3 6mte:A (3.4) BS03 MG ? GO:0002181 ... G1TT27 30355441
    4 6mte:AA (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    5 6mte:B (3.4) BS01 rna ? GO:0003723 ... G1TL06 30355441
    6 6mte:BB (3.4) BS01 rna ? GO:0003735 ... G1SS70 30355441
    7 6mte:BB (3.4) BS02 rna ? GO:0003735 ... G1SS70 30355441
    8 6mte:C (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    9 6mte:C (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    10 6mte:CC (3.4) BS01 rna ? GO:0003723 ... O18789 30355441
    11 6mte:D (3.4) BS01 rna ? GO:0000027 ... P19949 30355441
    12 6mte:D (3.4) BS02 rna ? GO:0000027 ... P19949 30355441
    13 6mte:DD (3.4) BS01 rna 4.2.99.18 GO:0003677 ... E2RH47 30355441
    14 6mte:E (3.4) BS01 rna ? GO:0000027 ... G1SKF7 30355441
    15 6mte:EE (3.4) BS01 rna ? GO:0003723 ... Q76N24 30355441
    16 6mte:F (3.4) BS01 rna ? GO:0000463 ... G1SV32 30355441
    17 6mte:F (3.4) BS02 rna ? GO:0000463 ... G1SV32 30355441
    18 6mte:FF (3.4) BS01 rna ? GO:0000028 ... G1TFM5 30355441
    19 6mte:G (3.4) BS01 rna N/A GO:0042254 ... N/A 30355441
    20 6mte:G (3.4) BS02 rna N/A GO:0042254 ... N/A 30355441
    21 6mte:GG (3.4) BS01 rna ? GO:0000082 ... G1TM55 30355441
    22 6mte:H (3.4) BS01 rna ? GO:0002181 ... G1SWI6 30355441
    23 6mte:HH (3.4) BS01 rna ? GO:0003735 ... G1SVB0 30355441
    24 6mte:I (3.4) BS01 rna ? GO:0000027 ... B7NZQ2 30355441
    25 6mte:I (3.4) BS02 rna ? GO:0000027 ... B7NZQ2 30355441
    26 6mte:II (3.4) BS01 rna ? GO:0000462 ... Q5E958 30355441
    27 6mte:J (3.4) BS01 rna ? GO:0003723 ... G1TUB8 30355441
    28 6mte:J (3.4) BS02 rna ? GO:0003723 ... G1TUB8 30355441
    29 6mte:JJ (3.4) BS01 rna ? GO:0003723 ... B7NZS8 30355441
    30 6mte:KK (3.4) BS01 rna ? N/A G1TPV3 30355441
    31 6mte:L (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    32 6mte:L (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    33 6mte:LL (3.4) BS01 rna ? GO:0003735 ... G1TRM4 30355441
    34 6mte:M (3.4) BS01 rna ? GO:0003723 ... G1SZ12 30355441
    35 6mte:MM (3.4) BS01 rna ? GO:0003735 ... G1SFR8 30355441
    36 6mte:N (3.4) BS01 rna ? GO:0002181 ... G1T0C1 30355441
    37 6mte:N (3.4) BS02 rna ? GO:0002181 ... G1T0C1 30355441
    38 6mte:NN (3.4) BS01 rna ? GO:0003735 ... G1SP51 30355441
    39 6mte:O (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    40 6mte:OO (3.4) BS01 rna ? GO:0000028 ... P13471 30355441
    41 6mte:P (3.4) BS01 rna ? GO:0003735 ... G1SCJ6 30355441
    42 6mte:P (3.4) BS02 rna ? GO:0003735 ... G1SCJ6 30355441
    43 6mte:PP (3.4) BS01 rna ? GO:0003723 ... G1U0Q2 30355441
    44 6mte:Q (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    45 6mte:QQ (3.4) BS01 rna ? GO:0000462 ... Q3T0X6 30355441
    46 6mte:R (3.4) BS01 rna ? GO:0003723 ... Q3T0W9 30355441
    47 6mte:R (3.4) BS02 rna ? GO:0003723 ... Q3T0W9 30355441
    48 6mte:RR (3.4) BS01 rna ? GO:0003735 ... G1TU13 30355441
    49 6mte:S (3.4) BS01 rna ? GO:0003735 ... A0A287APR1 30355441
    50 6mte:S (3.4) BS02 rna ? GO:0003735 ... A0A287APR1 30355441
    51 6mte:SS (3.4) BS01 rna ? GO:0003676 ... G1TPG3 30355441
    52 6mte:T (3.4) BS01 rna ? GO:0003735 ... G1SHQ2 30355441
    53 6mte:T (3.4) BS02 rna ? GO:0003735 ... G1SHQ2 30355441
    54 6mte:TT (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    55 6mte:TT (3.4) BS02 MG N/A GO:0003735 ... N/A 30355441
    56 6mte:U (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    57 6mte:UU (3.4) BS01 rna ? GO:0003723 ... Q3ZBH8 30355441
    58 6mte:V (3.4) BS01 rna ? GO:0000122 ... G1T6D1 30355441
    59 6mte:W (3.4) BS01 rna ? GO:0000027 ... G1SE28 30355441
    60 6mte:WW (3.4) BS01 rna ? GO:0003735 ... G1TG89 30355441
    61 6mte:X (3.4) BS01 rna ? GO:0003735 ... Q24JY1 30355441
    62 6mte:X (3.4) BS02 rna ? GO:0003735 ... Q24JY1 30355441
    63 6mte:XX (3.4) BS01 rna ? GO:0002181 ... Q3T199 30355441
    64 6mte:Y (3.4) BS01 rna ? GO:0002181 ... G1SQH0 30355441
    65 6mte:Y (3.4) BS02 rna ? GO:0002181 ... G1SQH0 30355441
    66 6mte:YY (3.4) BS01 rna ? GO:0002181 ... P62847 30355441
    67 6mte:Z (3.4) BS01 rna ? GO:0003735 ... G1TXF6 30355441
    68 6mte:ZZ (3.4) BS01 rna ? N/A G1TDB3 30355441
    69 6mte:a (3.4) BS01 rna ? GO:0003735 ... G1SNY0 30355441
    70 6mte:aa (3.4) BS01 rna ? GO:0003735 ... Q56JV1 30355441
    71 6mte:aa (3.4) BS02 ZN ? GO:0003735 ... Q56JV1 30355441
    72 6mte:b (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    73 6mte:bb (3.4) BS01 rna ? GO:0000028 ... Q2KHT7 30355441
    74 6mte:c (3.4) BS01 rna ? GO:0003723 ... G1TDL2 30355441
    75 6mte:c (3.4) BS02 rna ? GO:0003723 ... G1TDL2 30355441
    76 6mte:cc (3.4) BS01 rna ? GO:0000028 ... G1TIB4 30355441
    77 6mte:d (3.4) BS01 rna ? GO:0003735 ... G1SHG0 30355441
    78 6mte:dd (3.4) BS01 rna ? GO:0003735 ... G1U7M4 30355441
    79 6mte:e (3.4) BS01 rna ? GO:0003735 ... G1TUN8 30355441
    80 6mte:ee (3.4) BS01 rna ? GO:0003735 ... G1T8A2 30355441
    81 6mte:f (3.4) BS01 rna ? GO:0000049 ... G1SF08 30355441
    82 6mte:ff (3.4) BS01 rna ? GO:0003735 ... G1SK22 30355441
    83 6mte:ff (3.4) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    84 6mte:g (3.4) BS01 rna ? GO:0002181 ... P49207 30355441
    85 6mte:g (3.4) BS02 ZN ? GO:0002181 ... P49207 30355441
    86 6mte:gg (3.4) BS01 rna ? GO:0001891 ... G1SJB4 30355441
    87 6mte:h (3.4) BS01 rna ? GO:0000463 ... G1SIT5 30355441
    88 6mte:h (3.4) BS02 rna ? GO:0000463 ... G1SIT5 30355441
    89 6mte:i (3.4) BS01 rna ? GO:0002181 ... G1TTQ5 30355441
    90 6mte:j (3.4) BS01 rna ? GO:0003735 ... U3KPD5 30355441
    91 6mte:j (3.4) BS02 rna ? GO:0003735 ... U3KPD5 30355441
    92 6mte:j (3.4) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    93 6mte:k (3.4) BS01 rna ? GO:0003735 ... Q32PB9 30355441
    94 6mte:l (3.4) BS01 rna ? GO:0003735 ... G1TTN1 30355441
    95 6mte:l (3.4) BS02 rna ? GO:0003735 ... G1TTN1 30355441
    96 6mte:m (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    97 6mte:m (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    98 6mte:o (3.4) BS01 rna ? GO:0003735 ... G1T040 30355441
    99 6mte:o (3.4) BS02 ZN ? GO:0003735 ... G1T040 30355441
    100 6mte:p (3.4) BS01 rna ? GO:0003735 ... G1SY53 30355441
    101 6mte:p (3.4) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    102 6mte:r (3.4) BS01 rna ? GO:0003735 ... G1U7L1 30355441
    103 6mte:s (3.4) BS01 rna ? N/A Q29214 30355441
    104 6mte:t (3.4) BS01 rna ? GO:0003723 ... G1SMR7 30355441
    105 6mte:v (3.4) BS01 rna N/A GO:0003924 ... N/A 30355441
    106 6mte:v (3.4) BS02 rna N/A GO:0003924 ... N/A 30355441
    107 6mte:v (3.4) BS03 GDP N/A GO:0003924 ... N/A 30355441
    108 6mte:w (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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