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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6icz:A (3.0) BS01 rna ? GO:0000244 ... Q6P2Q9 30728453
    2 6icz:A (3.0) BS02 rna ? GO:0000244 ... Q6P2Q9 30728453
    3 6icz:A (3.0) BS03 rna ? GO:0000244 ... Q6P2Q9 30728453
    4 6icz:A (3.0) BS04 rna ? GO:0000244 ... Q6P2Q9 30728453
    5 6icz:A (3.0) BS05 peptide ? GO:0000244 ... Q6P2Q9 30728453
    6 6icz:A (3.0) BS06 IHP ? GO:0000244 ... Q6P2Q9 30728453
    7 6icz:C (3.0) BS01 GTP ? GO:0000398 ... Q15029 30728453
    8 6icz:J (3.0) BS01 rna ? GO:0000245 ... Q9BZJ0 30728453
    9 6icz:L (3.0) BS01 rna ? GO:0000077 ... Q99459 30728453
    10 6icz:L (3.0) BS02 rna ? GO:0000077 ... Q99459 30728453
    11 6icz:M (3.0) BS01 rna ? GO:0000398 ... O95926 30728453
    12 6icz:M (3.0) BS02 rna ? GO:0000398 ... O95926 30728453
    13 6icz:N (3.0) BS01 rna ? GO:0000398 ... P41223 30728453
    14 6icz:N (3.0) BS02 ZN ? GO:0000398 ... P41223 30728453
    15 6icz:N (3.0) BS03 ZN ? GO:0000398 ... P41223 30728453
    16 6icz:N (3.0) BS04 ZN ? GO:0000398 ... P41223 30728453
    17 6icz:O (3.0) BS01 rna ? GO:0000398 ... Q9NW64 30728453
    18 6icz:O (3.0) BS02 rna ? GO:0000398 ... Q9NW64 30728453
    19 6icz:O (3.0) BS03 ZN ? GO:0000398 ... Q9NW64 30728453
    20 6icz:O (3.0) BS04 ZN ? GO:0000398 ... Q9NW64 30728453
    21 6icz:O (3.0) BS05 ZN ? GO:0000398 ... Q9NW64 30728453
    22 6icz:P (3.0) BS01 rna ? GO:0000398 ... Q9P013 30728453
    23 6icz:P (3.0) BS02 rna ? GO:0000398 ... Q9P013 30728453
    24 6icz:P (3.0) BS03 rna ? GO:0000398 ... Q9P013 30728453
    25 6icz:Q (3.0) BS01 ATP 3.6.4.13 GO:0000398 ... O60306 30728453
    26 6icz:R (3.0) BS01 rna ? GO:0000122 ... Q13573 30728453
    27 6icz:R (3.0) BS02 rna ? GO:0000122 ... Q13573 30728453
    28 6icz:V (3.0) BS01 peptide ? GO:0000398 ... Q9HCG8 30728453
    29 6icz:W (3.0) BS01 rna ? GO:0000398 ... O60508 30728453
    30 6icz:W (3.0) BS02 rna ? GO:0000398 ... O60508 30728453
    31 6icz:X (3.0) BS01 rna ? GO:0003014 ... Q9H875 30728453
    32 6icz:X (3.0) BS02 rna ? GO:0003014 ... Q9H875 30728453
    33 6icz:Z (3.0) BS01 IHP ? GO:0000375 ... O95391 30728453
    34 6icz:Z (3.0) BS02 ZN ? GO:0000375 ... O95391 30728453
    35 6icz:d (3.0) BS01 rna ? GO:0000245 ... P62316 30728453
    36 6icz:e (3.0) BS01 rna ? GO:0000245 ... P62304 30728453
    37 6icz:g (3.0) BS01 rna ? GO:0000245 ... P62308 30728453
    38 6icz:i (3.0) BS01 rna ? GO:0000387 ... P14678 30728453
    39 6icz:j (3.0) BS01 rna ? GO:0000243 ... P62314 30728453
    40 6icz:p (3.0) BS01 rna ? GO:0000398 ... P08579 30728453
    41 6icz:u (3.0) BS01 peptide 3.6.4.13 GO:0000184 ... P38919 30728453
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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