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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6hvs:G (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    2 6hvs:H (3.1) BS01 GRT 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666 PDBbind: -logKd/Ki=5.23, IC50=5900nM
    3 6hvs:I (3.1) BS01 GRT 3.4.25.1 GO:0000502 ... P25451 30657666 PDBbind: -logKd/Ki=5.23, IC50=5900nM
    4 6hvs:K (3.1) BS01 GRT 3.4.25.1 GO:0004298 ... P30656 30657666
    5 6hvs:K (3.1) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    6 6hvs:L (3.1) BS01 GRT 3.4.25.1 GO:0000502 ... P23724 30657666
    7 6hvs:N (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    8 6hvs:V (3.1) BS01 GRT 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    9 6hvs:V (3.1) BS02 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    10 6hvs:W (3.1) BS01 GRT 3.4.25.1 GO:0000502 ... P25451 30657666
    11 6hvs:W (3.1) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    12 6hvs:Y (3.1) BS01 GRT 3.4.25.1 GO:0004298 ... P30656 30657666
    13 6hvs:Y (3.1) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    14 6hvs:Z (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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