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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6g31:A (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    2 6g31:A (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    3 6g31:A (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    4 6g31:B (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    5 6g31:B (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    6 6g31:B (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    7 6g31:C (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    8 6g31:C (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    9 6g31:C (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    10 6g31:D (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    11 6g31:D (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    12 6g31:D (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    13 6g31:E (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    14 6g31:E (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    15 6g31:E (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    16 6g31:F (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    17 6g31:F (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    18 6g31:G (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    19 6g31:G (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    20 6g31:G (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    21 6g31:H (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    22 6g31:H (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    23 6g31:H (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    24 6g31:I (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    25 6g31:I (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    26 6g31:I (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    27 6g31:J (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    28 6g31:J (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    29 6g31:J (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    30 6g31:K (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    31 6g31:K (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    32 6g31:K (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    33 6g31:L (3.0) BS01 ZOL 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041 BindingDB: IC50=100000nM, Ki=2700nM
    34 6g31:L (3.0) BS02 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    35 6g31:L (3.0) BS03 MG 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29    		 GO:0004161 ... O95749 30275041
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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