Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6enf:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 29100052
    2 6enf:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 29100052
    3 6enf:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 29100052
    4 6enf:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 29100052
    5 6enf:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 29100052
    6 6enf:6 (3.2) BS01 rna ? GO:0002181 ... P0A7M9 29100052
    7 6enf:C (3.2) BS01 rna ? GO:0000027 ... P60422 29100052
    8 6enf:C (3.2) BS02 rna ? GO:0000027 ... P60422 29100052
    9 6enf:D (3.2) BS01 rna ? GO:0000027 ... P60438 29100052
    10 6enf:E (3.2) BS01 rna ? GO:0001070 ... P60723 29100052
    11 6enf:F (3.2) BS01 rna ? GO:0000027 ... P62399 29100052
    12 6enf:F (3.2) BS02 rna ? GO:0000027 ... P62399 29100052
    13 6enf:F (3.2) BS03 rna ? GO:0000027 ... P62399 29100052
    14 6enf:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 29100052
    15 6enf:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 29100052
    16 6enf:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 29100052
    17 6enf:K (3.2) BS02 rna ? GO:0002181 ... P0ADY3 29100052
    18 6enf:L (3.2) BS01 rna ? GO:0002181 ... P02413 29100052
    19 6enf:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 29100052
    20 6enf:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 29100052
    21 6enf:O (3.2) BS01 rna ? GO:0002181 ... P0C018 29100052
    22 6enf:O (3.2) BS02 rna ? GO:0002181 ... P0C018 29100052
    23 6enf:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 29100052
    24 6enf:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 29100052
    25 6enf:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 29100052
    26 6enf:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 29100052
    27 6enf:S (3.2) BS01 rna ? GO:0002181 ... P61175 29100052
    28 6enf:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 29100052
    29 6enf:U (3.2) BS01 rna ? GO:0000027 ... P60624 29100052
    30 6enf:V (3.2) BS01 rna ? GO:0000027 ... P68919 29100052
    31 6enf:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 29100052
    32 6enf:W (3.2) BS02 rna ? GO:0000027 ... P0A7L8 29100052
    33 6enf:X (3.2) BS01 rna ? GO:0000027 ... P0A7M2 29100052
    34 6enf:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 29100052
    35 6enf:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 29100052
    36 6enf:Z (3.2) BS02 rna ? GO:0000027 ... P0AG51 29100052
    37 6enf:b (3.2) BS01 rna ? GO:0000028 ... P0A7V0 29100052
    38 6enf:c (3.2) BS01 rna ? GO:0003676 ... P0A7V3 29100052
    39 6enf:d (3.2) BS01 rna ? GO:0000028 ... P0A7V8 29100052
    40 6enf:e (3.2) BS01 rna ? GO:0000028 ... P0A7W1 29100052
    41 6enf:f (3.2) BS01 rna ? GO:0003735 ... P02358 29100052
    42 6enf:g (3.2) BS01 rna ? GO:0003723 ... P02359 29100052
    43 6enf:h (3.2) BS01 rna ? GO:0000028 ... P0A7W7 29100052
    44 6enf:i (3.2) BS01 rna ? GO:0000049 ... P0A7X3 29100052
    45 6enf:j (3.2) BS01 rna ? GO:0000049 ... P0A7R5 29100052
    46 6enf:k (3.2) BS01 rna ? GO:0002181 ... P0A7R9 29100052
    47 6enf:l (3.2) BS01 rna ? GO:0000049 ... P0A7S3 29100052
    48 6enf:m (3.2) BS01 rna ? GO:0000049 ... P0A7S9 29100052
    49 6enf:n (3.2) BS01 rna ? GO:0003735 ... P0AG59 29100052
    50 6enf:o (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 29100052
    51 6enf:o (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 29100052
    52 6enf:p (3.2) BS01 rna ? GO:0000028 ... P0A7T3 29100052
    53 6enf:q (3.2) BS01 rna ? GO:0000028 ... P0AG63 29100052
    54 6enf:r (3.2) BS01 rna ? GO:0003735 ... P0A7T7 29100052
    55 6enf:s (3.2) BS01 rna ? GO:0003723 ... P0A7U3 29100052
    56 6enf:t (3.2) BS01 rna ? GO:0000028 ... P0A7U7 29100052
    57 6enf:u (3.2) BS01 rna ? GO:0000028 ... P68679 29100052
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218