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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6dmf:A (2.4) BS01 BGC N/A N/A N/A 31062073
    2 6dmf:A (2.4) BS02 BGC N/A N/A N/A 31062073
    3 6dmf:A (2.4) BS03 BGC N/A N/A N/A 31062073
    4 6dmf:A (2.4) BS04 BGC N/A N/A N/A 31062073
    5 6dmf:A (2.4) BS05 MG N/A N/A N/A 31062073
    6 6dmf:B (2.4) BS01 BGC N/A N/A N/A 31062073
    7 6dmf:B (2.4) BS02 MG N/A N/A N/A 31062073
    8 6dmf:C (2.4) BS01 BGC N/A N/A N/A 31062073
    9 6dmf:C (2.4) BS02 BGC N/A N/A N/A 31062073
    10 6dmf:C (2.4) BS03 BGC N/A N/A N/A 31062073
    11 6dmf:C (2.4) BS04 MG N/A N/A N/A 31062073
    12 6dmf:D (2.4) BS01 BGC N/A N/A N/A 31062073
    13 6dmf:D (2.4) BS02 BGC N/A N/A N/A 31062073
    14 6dmf:D (2.4) BS03 BGC N/A N/A N/A 31062073
    15 6dmf:D (2.4) BS04 BGC N/A N/A N/A 31062073
    16 6dmf:D (2.4) BS05 MG N/A N/A N/A 31062073
    17 6dmf:E (2.4) BS01 BGC N/A N/A N/A 31062073
    18 6dmf:E (2.4) BS02 BGC N/A N/A N/A 31062073
    19 6dmf:E (2.4) BS03 BGC N/A N/A N/A 31062073
    20 6dmf:E (2.4) BS04 MG N/A N/A N/A 31062073
    21 6dmf:F (2.4) BS01 BGC N/A N/A N/A 31062073
    22 6dmf:F (2.4) BS02 BGC N/A N/A N/A 31062073
    23 6dmf:F (2.4) BS03 BGC N/A N/A N/A 31062073
    24 6dmf:F (2.4) BS04 MG N/A N/A N/A 31062073
    25 6dmf:G (2.4) BS01 BGC N/A N/A N/A 31062073
    26 6dmf:G (2.4) BS02 BGC N/A N/A N/A 31062073
    27 6dmf:G (2.4) BS03 BGC N/A N/A N/A 31062073
    28 6dmf:G (2.4) BS04 MG N/A N/A N/A 31062073
    29 6dmf:H (2.4) BS01 BGC N/A N/A N/A 31062073
    30 6dmf:H (2.4) BS02 BGC N/A N/A N/A 31062073
    31 6dmf:H (2.4) BS03 MG N/A N/A N/A 31062073
    32 6dmf:I (2.4) BS01 BGC N/A N/A N/A 31062073
    33 6dmf:I (2.4) BS02 BGC N/A N/A N/A 31062073
    34 6dmf:I (2.4) BS03 MG N/A N/A N/A 31062073
    35 6dmf:J (2.4) BS01 BGC N/A N/A N/A 31062073
    36 6dmf:J (2.4) BS02 BGC N/A N/A N/A 31062073
    37 6dmf:J (2.4) BS03 MG N/A N/A N/A 31062073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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