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BioLiP
Download all results in tab-seperated text for 157 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6buw:QB (3.5) BS01 rna ? GO:0003735 ... P80371 30476222
    2 6buw:QC (3.5) BS01 rna ? GO:0003676 ... P80372 30476222
    3 6buw:QC (3.5) BS02 MG ? GO:0003676 ... P80372 30476222
    4 6buw:QD (3.5) BS01 rna ? GO:0003723 ... P80373 30476222
    5 6buw:QD (3.5) BS02 SF4 ? GO:0003723 ... P80373 30476222
    6 6buw:QE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    7 6buw:QF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    8 6buw:QG (3.5) BS01 rna ? GO:0000028 ... P17291 30476222
    9 6buw:QH (3.5) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    10 6buw:QI (3.5) BS01 rna ? GO:0000049 ... P80374 30476222
    11 6buw:QJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    12 6buw:QJ (3.5) BS02 rna ? GO:0000049 ... Q5SHN7 30476222
    13 6buw:QJ (3.5) BS03 MG ? GO:0000049 ... Q5SHN7 30476222
    14 6buw:QK (3.5) BS01 rna ? GO:0003735 ... P80376 30476222
    15 6buw:QL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    16 6buw:QM (3.5) BS01 rna ? GO:0000049 ... P80377 30476222
    17 6buw:QM (3.5) BS02 rna ? GO:0000049 ... P80377 30476222
    18 6buw:QM (3.5) BS03 MG ? GO:0000049 ... P80377 30476222
    19 6buw:QN (3.5) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    20 6buw:QN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    21 6buw:QO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    22 6buw:QO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    23 6buw:QP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    24 6buw:QQ (3.5) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    25 6buw:QR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    26 6buw:QS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    27 6buw:QT (3.5) BS01 rna ? GO:0003723 ... P80380 30476222
    28 6buw:R0 (3.5) BS01 rna ? GO:0003735 ... P60493 30476222
    29 6buw:R0 (3.5) BS02 rna ? GO:0003735 ... P60493 30476222
    30 6buw:R0 (3.5) BS03 rna ? GO:0003735 ... P60493 30476222
    31 6buw:R1 (3.5) BS01 rna ? GO:0003735 ... P60494 30476222
    32 6buw:R2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    33 6buw:R3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    34 6buw:R3 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    35 6buw:R4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    36 6buw:R4 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    37 6buw:R5 (3.5) BS01 rna ? GO:0003735 ... P80339 30476222
    38 6buw:R5 (3.5) BS02 ZN ? GO:0003735 ... P80339 30476222
    39 6buw:R5 (3.5) BS03 MG ? GO:0003735 ... P80339 30476222
    40 6buw:R6 (3.5) BS01 rna ? GO:0000049 ... P35871 30476222
    41 6buw:R6 (3.5) BS02 ZN ? GO:0000049 ... P35871 30476222
    42 6buw:R7 (3.5) BS01 rna ? GO:0003735 ... P80340 30476222
    43 6buw:R8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    44 6buw:R9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    45 6buw:R9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    46 6buw:RD (3.5) BS01 rna ? GO:0002181 ... P60405 30476222
    47 6buw:RE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    48 6buw:RE (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    49 6buw:RF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    50 6buw:RF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 30476222
    51 6buw:RF (3.5) BS03 MG ? GO:0003735 ... Q5SHN9 30476222
    52 6buw:RG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    53 6buw:RG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    54 6buw:RG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    55 6buw:RH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    56 6buw:RI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    57 6buw:RN (3.5) BS01 rna ? GO:0003729 ... P60488 30476222
    58 6buw:RO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    59 6buw:RO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    60 6buw:RP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    61 6buw:RQ (3.5) BS01 rna ? GO:0000049 ... P60489 30476222
    62 6buw:RQ (3.5) BS02 rna ? GO:0000049 ... P60489 30476222
    63 6buw:RQ (3.5) BS03 MG ? GO:0000049 ... P60489 30476222
    64 6buw:RR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    65 6buw:RS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    66 6buw:RS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    67 6buw:RT (3.5) BS01 rna ? GO:0003735 ... P60490 30476222
    68 6buw:RT (3.5) BS02 rna ? GO:0003735 ... P60490 30476222
    69 6buw:RU (3.5) BS01 rna ? GO:0000027 ... P60491 30476222
    70 6buw:RV (3.5) BS01 rna ? GO:0003723 ... P60492 30476222
    71 6buw:RW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    72 6buw:RX (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 30476222
    73 6buw:RY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    74 6buw:RY (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    75 6buw:RZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    76 6buw:RZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222
    77 6buw:XB (3.5) BS01 rna ? GO:0003735 ... P80371 30476222
    78 6buw:XC (3.5) BS01 rna ? GO:0003676 ... P80372 30476222
    79 6buw:XD (3.5) BS01 rna ? GO:0003723 ... P80373 30476222
    80 6buw:XD (3.5) BS02 SF4 ? GO:0003723 ... P80373 30476222
    81 6buw:XE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    82 6buw:XE (3.5) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    83 6buw:XF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    84 6buw:XG (3.5) BS01 rna ? GO:0000028 ... P17291 30476222
    85 6buw:XH (3.5) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    86 6buw:XI (3.5) BS01 rna ? GO:0000049 ... P80374 30476222
    87 6buw:XJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    88 6buw:XK (3.5) BS01 rna ? GO:0003735 ... P80376 30476222
    89 6buw:XK (3.5) BS02 MG ? GO:0003735 ... P80376 30476222
    90 6buw:XL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    91 6buw:XL (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 30476222
    92 6buw:XM (3.5) BS01 rna ? GO:0000049 ... P80377 30476222
    93 6buw:XM (3.5) BS02 rna ? GO:0000049 ... P80377 30476222
    94 6buw:XM (3.5) BS03 MG ? GO:0000049 ... P80377 30476222
    95 6buw:XM (3.5) BS04 MG ? GO:0000049 ... P80377 30476222
    96 6buw:XM (3.5) BS05 MG ? GO:0000049 ... P80377 30476222
    97 6buw:XM (3.5) BS06 MG ? GO:0000049 ... P80377 30476222
    98 6buw:XN (3.5) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    99 6buw:XN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    100 6buw:XO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    101 6buw:XO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    102 6buw:XP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    103 6buw:XQ (3.5) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    104 6buw:XQ (3.5) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    105 6buw:XR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    106 6buw:XS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    107 6buw:XT (3.5) BS01 rna ? GO:0003723 ... P80380 30476222
    108 6buw:Y0 (3.5) BS01 rna ? GO:0003735 ... P60493 30476222
    109 6buw:Y0 (3.5) BS02 rna ? GO:0003735 ... P60493 30476222
    110 6buw:Y0 (3.5) BS03 rna ? GO:0003735 ... P60493 30476222
    111 6buw:Y1 (3.5) BS01 rna ? GO:0003735 ... P60494 30476222
    112 6buw:Y2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    113 6buw:Y3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    114 6buw:Y3 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    115 6buw:Y4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    116 6buw:Y4 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    117 6buw:Y5 (3.5) BS01 rna ? GO:0003735 ... P80339 30476222
    118 6buw:Y5 (3.5) BS02 ZN ? GO:0003735 ... P80339 30476222
    119 6buw:Y6 (3.5) BS01 rna ? GO:0000049 ... P35871 30476222
    120 6buw:Y7 (3.5) BS01 rna ? GO:0003735 ... P80340 30476222
    121 6buw:Y8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    122 6buw:Y9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    123 6buw:Y9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    124 6buw:YD (3.5) BS01 rna ? GO:0002181 ... P60405 30476222
    125 6buw:YD (3.5) BS02 MG ? GO:0002181 ... P60405 30476222
    126 6buw:YD (3.5) BS03 MG ? GO:0002181 ... P60405 30476222
    127 6buw:YE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    128 6buw:YE (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    129 6buw:YF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    130 6buw:YG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    131 6buw:YG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    132 6buw:YG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    133 6buw:YH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    134 6buw:YI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    135 6buw:YI (3.5) BS02 rna ? GO:0003735 ... Q5SLQ1 30476222
    136 6buw:YN (3.5) BS01 rna ? GO:0003729 ... P60488 30476222
    137 6buw:YO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    138 6buw:YO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    139 6buw:YP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    140 6buw:YQ (3.5) BS01 rna ? GO:0000049 ... P60489 30476222
    141 6buw:YQ (3.5) BS02 rna ? GO:0000049 ... P60489 30476222
    142 6buw:YR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    143 6buw:YS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    144 6buw:YS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    145 6buw:YT (3.5) BS01 rna ? GO:0003735 ... P60490 30476222
    146 6buw:YT (3.5) BS02 rna ? GO:0003735 ... P60490 30476222
    147 6buw:YU (3.5) BS01 rna ? GO:0000027 ... P60491 30476222
    148 6buw:YV (3.5) BS01 rna ? GO:0003723 ... P60492 30476222
    149 6buw:YW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    150 6buw:YX (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 30476222
    151 6buw:YX (3.5) BS02 MG ? GO:0000027 ... Q5SHP0 30476222
    152 6buw:YX (3.5) BS03 MG ? GO:0000027 ... Q5SHP0 30476222
    153 6buw:YY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    154 6buw:YY (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    155 6buw:YY (3.5) BS03 MG ? GO:0003723 ... Q5SHP9 30476222
    156 6buw:YZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    157 6buw:YZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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