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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2780 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5y6p:F7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    202 5y6p:F7 (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    203 5y6p:F7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    204 5y6p:F8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    205 5y6p:F8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    206 5y6p:F9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    207 5y6p:F9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    208 5y6p:F9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    209 5y6p:F9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    210 5y6p:G2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    211 5y6p:G2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    212 5y6p:G3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    213 5y6p:G3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    214 5y6p:G3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    215 5y6p:G3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    216 5y6p:G4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    217 5y6p:G4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    218 5y6p:G5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    219 5y6p:G5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    220 5y6p:G5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    221 5y6p:G6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    222 5y6p:G6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    223 5y6p:G6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    224 5y6p:G7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    225 5y6p:G7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    226 5y6p:G7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    227 5y6p:G8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    228 5y6p:G8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    229 5y6p:G8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    230 5y6p:G8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    231 5y6p:G9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    232 5y6p:G9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    233 5y6p:G9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    234 5y6p:H2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    235 5y6p:H2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    236 5y6p:H2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    237 5y6p:H3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    238 5y6p:H3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    239 5y6p:H3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    240 5y6p:H3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    241 5y6p:H4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    242 5y6p:H4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    243 5y6p:H4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    244 5y6p:H5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    245 5y6p:H5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    246 5y6p:H5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    247 5y6p:H6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    248 5y6p:H6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    249 5y6p:H6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    250 5y6p:H6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    251 5y6p:H7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    252 5y6p:H7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    253 5y6p:H7 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    254 5y6p:H7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    255 5y6p:H8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    256 5y6p:H8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    257 5y6p:H8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    258 5y6p:H9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    259 5y6p:H9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    260 5y6p:H9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    261 5y6p:H9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    262 5y6p:I2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    263 5y6p:I2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    264 5y6p:I2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    265 5y6p:I2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    266 5y6p:I3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    267 5y6p:I3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    268 5y6p:I4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    269 5y6p:I4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    270 5y6p:I5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    271 5y6p:I5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    272 5y6p:I5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    273 5y6p:I5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    274 5y6p:I6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    275 5y6p:I6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    276 5y6p:I6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    277 5y6p:I7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    278 5y6p:I7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    279 5y6p:I8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    280 5y6p:I8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    281 5y6p:I8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    282 5y6p:I9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    283 5y6p:I9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    284 5y6p:I9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    285 5y6p:I9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    286 5y6p:J2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    287 5y6p:J2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    288 5y6p:J2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    289 5y6p:J2 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    290 5y6p:J3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    291 5y6p:J3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    292 5y6p:J3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    293 5y6p:J3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    294 5y6p:J4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    295 5y6p:J4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    296 5y6p:J4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    297 5y6p:J5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    298 5y6p:J5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    299 5y6p:J5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    300 5y6p:J5 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    301 5y6p:J6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    302 5y6p:J6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    303 5y6p:J6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    304 5y6p:J7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    305 5y6p:J7 (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    306 5y6p:J7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    307 5y6p:J7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    308 5y6p:J8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    309 5y6p:J8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    310 5y6p:J8 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    311 5y6p:J8 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    312 5y6p:J9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    313 5y6p:J9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    314 5y6p:J9 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    315 5y6p:J9 (3.5) BS04 PUB N/A GO:0015979 ... N/A 29045394
    316 5y6p:K2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    317 5y6p:K2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    318 5y6p:K2 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    319 5y6p:K3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    320 5y6p:K3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    321 5y6p:K3 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    322 5y6p:K4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    323 5y6p:K4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    324 5y6p:K4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    325 5y6p:K5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    326 5y6p:K5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    327 5y6p:K5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    328 5y6p:K6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    329 5y6p:K6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    330 5y6p:K6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    331 5y6p:K7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    332 5y6p:K7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    333 5y6p:K8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    334 5y6p:K8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    335 5y6p:K8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    336 5y6p:K9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    337 5y6p:K9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    338 5y6p:L2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    339 5y6p:L2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    340 5y6p:L2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    341 5y6p:L2 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    342 5y6p:L3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    343 5y6p:L3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    344 5y6p:L3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    345 5y6p:L3 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    346 5y6p:L4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    347 5y6p:L4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    348 5y6p:L4 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    349 5y6p:L4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    350 5y6p:L5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    351 5y6p:L5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    352 5y6p:L5 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    353 5y6p:L6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    354 5y6p:L6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    355 5y6p:L6 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    356 5y6p:L6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    357 5y6p:L7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    358 5y6p:L7 (3.5) BS02 PUB N/A GO:0015979 ... N/A 29045394
    359 5y6p:L7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    360 5y6p:L8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    361 5y6p:L8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    362 5y6p:L9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    363 5y6p:L9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    364 5y6p:L9 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    365 5y6p:L9 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    366 5y6p:M2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    367 5y6p:M2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    368 5y6p:M3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    369 5y6p:M3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    370 5y6p:M4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    371 5y6p:M4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    372 5y6p:M4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    373 5y6p:M4 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    374 5y6p:M5 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    375 5y6p:M5 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    376 5y6p:M5 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    377 5y6p:M5 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    378 5y6p:M6 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    379 5y6p:M6 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    380 5y6p:M6 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    381 5y6p:M6 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    382 5y6p:M7 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    383 5y6p:M7 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    384 5y6p:M7 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    385 5y6p:M7 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    386 5y6p:M8 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    387 5y6p:M8 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    388 5y6p:M8 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    389 5y6p:M8 (3.5) BS04 PEB N/A GO:0015979 ... N/A 29045394
    390 5y6p:M9 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    391 5y6p:M9 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    392 5y6p:N2 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    393 5y6p:N2 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    394 5y6p:N2 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    395 5y6p:N3 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    396 5y6p:N3 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    397 5y6p:N3 (3.5) BS03 PUB N/A GO:0015979 ... N/A 29045394
    398 5y6p:N4 (3.5) BS01 PEB N/A GO:0015979 ... N/A 29045394
    399 5y6p:N4 (3.5) BS02 PEB N/A GO:0015979 ... N/A 29045394
    400 5y6p:N4 (3.5) BS03 PEB N/A GO:0015979 ... N/A 29045394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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