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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5oxv:A (6.721) BS01 dna ? GO:0000786 ... P84233 28893533
    2 5oxv:A (6.721) BS02 dna ? GO:0000786 ... P84233 28893533
    3 5oxv:B (6.721) BS01 dna ? GO:0000786 ... P62799 28893533
    4 5oxv:B (6.721) BS02 dna ? GO:0000786 ... P62799 28893533
    5 5oxv:C (6.721) BS01 dna ? GO:0000786 ... P06897 28893533
    6 5oxv:C (6.721) BS02 dna ? GO:0000786 ... P06897 28893533
    7 5oxv:D (6.721) BS01 dna ? GO:0000786 ... P02281 28893533
    8 5oxv:D (6.721) BS02 dna ? GO:0000786 ... P02281 28893533
    9 5oxv:E (6.721) BS01 dna ? GO:0000786 ... P84233 28893533
    10 5oxv:E (6.721) BS02 dna ? GO:0000786 ... P84233 28893533
    11 5oxv:F (6.721) BS01 dna ? GO:0000786 ... P62799 28893533
    12 5oxv:F (6.721) BS02 dna ? GO:0000786 ... P62799 28893533
    13 5oxv:G (6.721) BS01 dna ? GO:0000786 ... P06897 28893533
    14 5oxv:G (6.721) BS02 dna ? GO:0000786 ... P06897 28893533
    15 5oxv:H (6.721) BS01 dna ? GO:0000786 ... P02281 28893533
    16 5oxv:H (6.721) BS02 dna ? GO:0000786 ... P02281 28893533
    17 5oxv:K (6.721) BS01 dna ? GO:0000786 ... P84233 28893533
    18 5oxv:K (6.721) BS02 dna ? GO:0000786 ... P84233 28893533
    19 5oxv:L (6.721) BS01 dna ? GO:0000786 ... P62799 28893533
    20 5oxv:L (6.721) BS02 dna ? GO:0000786 ... P62799 28893533
    21 5oxv:M (6.721) BS01 dna ? GO:0000786 ... P06897 28893533
    22 5oxv:M (6.721) BS02 dna ? GO:0000786 ... P06897 28893533
    23 5oxv:N (6.721) BS01 dna ? GO:0000786 ... P02281 28893533
    24 5oxv:N (6.721) BS02 dna ? GO:0000786 ... P02281 28893533
    25 5oxv:O (6.721) BS01 dna ? GO:0000786 ... P84233 28893533
    26 5oxv:O (6.721) BS02 dna ? GO:0000786 ... P84233 28893533
    27 5oxv:P (6.721) BS01 dna ? GO:0000786 ... P62799 28893533
    28 5oxv:P (6.721) BS02 dna ? GO:0000786 ... P62799 28893533
    29 5oxv:Q (6.721) BS01 dna ? GO:0000786 ... P06897 28893533
    30 5oxv:Q (6.721) BS02 dna ? GO:0000786 ... P06897 28893533
    31 5oxv:R (6.721) BS01 dna ? GO:0000786 ... P02281 28893533
    32 5oxv:R (6.721) BS02 dna ? GO:0000786 ... P02281 28893533
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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