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BioLiP
Download all results in tab-seperated text for 337 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5mdx:S (5.3) BS12 CLA ? GO:0009765 ... Q9XF89 28604725
    202 5mdx:S (5.3) BS13 CLA ? GO:0009765 ... Q9XF89 28604725
    203 5mdx:Y (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    204 5mdx:Y (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    205 5mdx:Y (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    206 5mdx:Y (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    207 5mdx:Y (5.3) BS05 CLA ? GO:0009765 ... P04778 28604725
    208 5mdx:Y (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    209 5mdx:Y (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    210 5mdx:Y (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    211 5mdx:Y (5.3) BS09 CHL ? GO:0009765 ... P04778 28604725
    212 5mdx:Y (5.3) BS10 CHL ? GO:0009765 ... P04778 28604725
    213 5mdx:Y (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    214 5mdx:Y (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    215 5mdx:Y (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    216 5mdx:Y (5.3) BS14 CLA ? GO:0009765 ... P04778 28604725
    217 5mdx:Y (5.3) BS15 CLA ? GO:0009765 ... P04778 28604725
    218 5mdx:a (5.3) BS01 peptide 1.10.3.9 GO:0003729 ... P83755 28604725
    219 5mdx:a (5.3) BS02 FE2 1.10.3.9 GO:0003729 ... P83755 28604725
    220 5mdx:a (5.3) BS03 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    221 5mdx:a (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    222 5mdx:a (5.3) BS05 PHO 1.10.3.9 GO:0003729 ... P83755 28604725
    223 5mdx:a (5.3) BS06 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    224 5mdx:a (5.3) BS07 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    225 5mdx:a (5.3) BS08 PHO 1.10.3.9 GO:0003729 ... P83755 28604725
    226 5mdx:b (5.3) BS01 peptide ? GO:0003729 ... P56777 28604725
    227 5mdx:b (5.3) BS02 CLA ? GO:0003729 ... P56777 28604725
    228 5mdx:b (5.3) BS03 CLA ? GO:0003729 ... P56777 28604725
    229 5mdx:b (5.3) BS04 CLA ? GO:0003729 ... P56777 28604725
    230 5mdx:b (5.3) BS05 CLA ? GO:0003729 ... P56777 28604725
    231 5mdx:b (5.3) BS06 CLA ? GO:0003729 ... P56777 28604725
    232 5mdx:b (5.3) BS07 CLA ? GO:0003729 ... P56777 28604725
    233 5mdx:b (5.3) BS08 CLA ? GO:0003729 ... P56777 28604725
    234 5mdx:b (5.3) BS09 CLA ? GO:0003729 ... P56777 28604725
    235 5mdx:b (5.3) BS10 CLA ? GO:0003729 ... P56777 28604725
    236 5mdx:b (5.3) BS11 CLA ? GO:0003729 ... P56777 28604725
    237 5mdx:b (5.3) BS12 CLA ? GO:0003729 ... P56777 28604725
    238 5mdx:b (5.3) BS13 CLA ? GO:0003729 ... P56777 28604725
    239 5mdx:b (5.3) BS14 CLA ? GO:0003729 ... P56777 28604725
    240 5mdx:b (5.3) BS15 CLA ? GO:0003729 ... P56777 28604725
    241 5mdx:b (5.3) BS16 CLA ? GO:0003729 ... P56777 28604725
    242 5mdx:b (5.3) BS17 CLA ? GO:0003729 ... P56777 28604725
    243 5mdx:c (5.3) BS01 CLA ? GO:0003729 ... P56778 28604725
    244 5mdx:c (5.3) BS02 CLA ? GO:0003729 ... P56778 28604725
    245 5mdx:c (5.3) BS03 CLA ? GO:0003729 ... P56778 28604725
    246 5mdx:c (5.3) BS04 CLA ? GO:0003729 ... P56778 28604725
    247 5mdx:c (5.3) BS05 CLA ? GO:0003729 ... P56778 28604725
    248 5mdx:c (5.3) BS06 CLA ? GO:0003729 ... P56778 28604725
    249 5mdx:c (5.3) BS07 CLA ? GO:0003729 ... P56778 28604725
    250 5mdx:c (5.3) BS08 CLA ? GO:0003729 ... P56778 28604725
    251 5mdx:c (5.3) BS09 CLA ? GO:0003729 ... P56778 28604725
    252 5mdx:c (5.3) BS10 CLA ? GO:0003729 ... P56778 28604725
    253 5mdx:c (5.3) BS11 CLA ? GO:0003729 ... P56778 28604725
    254 5mdx:c (5.3) BS12 CLA ? GO:0003729 ... P56778 28604725
    255 5mdx:c (5.3) BS13 CLA ? GO:0003729 ... P56778 28604725
    256 5mdx:d (5.3) BS01 peptide 1.10.3.9 GO:0003729 ... P56761 28604725
    257 5mdx:d (5.3) BS02 peptide 1.10.3.9 GO:0003729 ... P56761 28604725
    258 5mdx:d (5.3) BS03 FE2 1.10.3.9 GO:0003729 ... P56761 28604725
    259 5mdx:d (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    260 5mdx:d (5.3) BS05 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    261 5mdx:d (5.3) BS06 PHO 1.10.3.9 GO:0003729 ... P56761 28604725
    262 5mdx:d (5.3) BS07 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    263 5mdx:d (5.3) BS08 CLA 1.10.3.9 GO:0003729 ... P56761 28604725
    264 5mdx:e (5.3) BS01 peptide ? GO:0005506 ... P56779 28604725
    265 5mdx:e (5.3) BS02 HEM ? GO:0005506 ... P56779 28604725
    266 5mdx:g (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    267 5mdx:g (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    268 5mdx:g (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    269 5mdx:g (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    270 5mdx:g (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    271 5mdx:g (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    272 5mdx:g (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    273 5mdx:g (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    274 5mdx:g (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    275 5mdx:g (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    276 5mdx:g (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    277 5mdx:g (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    278 5mdx:g (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    279 5mdx:h (5.3) BS01 CLA ? GO:0003729 ... P56780 28604725
    280 5mdx:i (5.3) BS01 CLA ? GO:0005737 ... P62100 28604725
    281 5mdx:l (5.3) BS01 peptide ? GO:0005737 ... P60129 28604725
    282 5mdx:l (5.3) BS02 peptide ? GO:0005737 ... P60129 28604725
    283 5mdx:n (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    284 5mdx:n (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    285 5mdx:n (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    286 5mdx:n (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    287 5mdx:n (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    288 5mdx:n (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    289 5mdx:n (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    290 5mdx:n (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    291 5mdx:n (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    292 5mdx:n (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    293 5mdx:n (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    294 5mdx:n (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    295 5mdx:n (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    296 5mdx:r (5.3) BS01 CLA ? GO:0009765 ... Q07473 28604725
    297 5mdx:r (5.3) BS02 CLA ? GO:0009765 ... Q07473 28604725
    298 5mdx:r (5.3) BS03 CLA ? GO:0009765 ... Q07473 28604725
    299 5mdx:r (5.3) BS04 CHL ? GO:0009765 ... Q07473 28604725
    300 5mdx:r (5.3) BS05 CHL ? GO:0009765 ... Q07473 28604725
    301 5mdx:r (5.3) BS06 CHL ? GO:0009765 ... Q07473 28604725
    302 5mdx:r (5.3) BS07 CLA ? GO:0009765 ... Q07473 28604725
    303 5mdx:r (5.3) BS08 CLA ? GO:0009765 ... Q07473 28604725
    304 5mdx:r (5.3) BS09 CLA ? GO:0009765 ... Q07473 28604725
    305 5mdx:r (5.3) BS10 CLA ? GO:0009765 ... Q07473 28604725
    306 5mdx:r (5.3) BS11 CLA ? GO:0009765 ... Q07473 28604725
    307 5mdx:r (5.3) BS12 CLA ? GO:0009765 ... Q07473 28604725
    308 5mdx:r (5.3) BS13 CLA ? GO:0009765 ... Q07473 28604725
    309 5mdx:r (5.3) BS14 CHL ? GO:0009765 ... Q07473 28604725
    310 5mdx:s (5.3) BS01 CLA ? GO:0009765 ... Q9XF89 28604725
    311 5mdx:s (5.3) BS02 CHL ? GO:0009765 ... Q9XF89 28604725
    312 5mdx:s (5.3) BS03 CLA ? GO:0009765 ... Q9XF89 28604725
    313 5mdx:s (5.3) BS04 CLA ? GO:0009765 ... Q9XF89 28604725
    314 5mdx:s (5.3) BS05 CLA ? GO:0009765 ... Q9XF89 28604725
    315 5mdx:s (5.3) BS06 CHL ? GO:0009765 ... Q9XF89 28604725
    316 5mdx:s (5.3) BS07 CHL ? GO:0009765 ... Q9XF89 28604725
    317 5mdx:s (5.3) BS08 CLA ? GO:0009765 ... Q9XF89 28604725
    318 5mdx:s (5.3) BS09 CLA ? GO:0009765 ... Q9XF89 28604725
    319 5mdx:s (5.3) BS10 CLA ? GO:0009765 ... Q9XF89 28604725
    320 5mdx:s (5.3) BS11 CLA ? GO:0009765 ... Q9XF89 28604725
    321 5mdx:s (5.3) BS12 CLA ? GO:0009765 ... Q9XF89 28604725
    322 5mdx:s (5.3) BS13 CLA ? GO:0009765 ... Q9XF89 28604725
    323 5mdx:y (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    324 5mdx:y (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    325 5mdx:y (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    326 5mdx:y (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    327 5mdx:y (5.3) BS05 CLA ? GO:0009765 ... P04778 28604725
    328 5mdx:y (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    329 5mdx:y (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    330 5mdx:y (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    331 5mdx:y (5.3) BS09 CHL ? GO:0009765 ... P04778 28604725
    332 5mdx:y (5.3) BS10 CHL ? GO:0009765 ... P04778 28604725
    333 5mdx:y (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    334 5mdx:y (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    335 5mdx:y (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    336 5mdx:y (5.3) BS14 CLA ? GO:0009765 ... P04778 28604725
    337 5mdx:y (5.3) BS15 CLA ? GO:0009765 ... P04778 28604725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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