Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 115 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lzt:A (3.65) BS01 rna ? GO:0002181 ... G1TT27 27863242
    2 5lzt:A (3.65) BS02 rna ? GO:0002181 ... G1TT27 27863242
    3 5lzt:AA (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    4 5lzt:B (3.65) BS01 rna ? GO:0003723 ... G1TL06 27863242
    5 5lzt:BB (3.65) BS01 rna ? GO:0003735 ... G1SS70 27863242
    6 5lzt:C (3.65) BS01 rna ? GO:0003723 ... G1SVW5 27863242
    7 5lzt:C (3.65) BS02 rna ? GO:0003723 ... G1SVW5 27863242
    8 5lzt:CC (3.65) BS01 rna N/A GO:0003723 ... N/A 27863242
    9 5lzt:D (3.65) BS01 rna ? GO:0000027 ... P19949 27863242
    10 5lzt:D (3.65) BS02 rna ? GO:0000027 ... P19949 27863242
    11 5lzt:DD (3.65) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 27863242
    12 5lzt:E (3.65) BS01 rna ? GO:0000027 ... G1SKF7 27863242
    13 5lzt:EE (3.65) BS01 rna N/A GO:0003723 ... N/A 27863242
    14 5lzt:F (3.65) BS01 rna ? GO:0000463 ... G1TUB1 27863242
    15 5lzt:F (3.65) BS02 rna ? GO:0000463 ... G1TUB1 27863242
    16 5lzt:FF (3.65) BS01 rna ? GO:0000028 ... G1TFM5 27863242
    17 5lzt:FF (3.65) BS02 rna ? GO:0000028 ... G1TFM5 27863242
    18 5lzt:FF (3.65) BS03 MG ? GO:0000028 ... G1TFM5 27863242
    19 5lzt:G (3.65) BS01 rna ? GO:0000470 ... G1STW0 27863242
    20 5lzt:G (3.65) BS02 rna ? GO:0000470 ... G1STW0 27863242
    21 5lzt:GG (3.65) BS01 rna ? GO:0000082 ... G1TM55 27863242
    22 5lzt:H (3.65) BS01 rna ? GO:0002181 ... G1SWI6 27863242
    23 5lzt:HH (3.65) BS01 rna ? GO:0003735 ... G1SVB0 27863242
    24 5lzt:I (3.65) BS01 rna ? GO:0000027 ... B7NZQ2 27863242
    25 5lzt:I (3.65) BS02 rna ? GO:0000027 ... B7NZQ2 27863242
    26 5lzt:II (3.65) BS01 rna ? GO:0000462 ... G1TJW1 27863242
    27 5lzt:II (3.65) BS02 rna ? GO:0000462 ... G1TJW1 27863242
    28 5lzt:J (3.65) BS01 rna ? GO:0003723 ... G1TUB8 27863242
    29 5lzt:J (3.65) BS02 rna ? GO:0003723 ... G1TUB8 27863242
    30 5lzt:J (3.65) BS03 rna ? GO:0003723 ... G1TUB8 27863242
    31 5lzt:JJ (3.65) BS01 rna ? GO:0003723 ... B7NZS8 27863242
    32 5lzt:KK (3.65) BS01 rna ? GO:0003723 ... G1TPV3 27863242
    33 5lzt:L (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    34 5lzt:L (3.65) BS02 rna N/A GO:0003735 ... N/A 27863242
    35 5lzt:LL (3.65) BS01 rna ? GO:0003735 ... G1TRM4 27863242
    36 5lzt:M (3.65) BS01 rna ? GO:0003723 ... G1SZ12 27863242
    37 5lzt:MM (3.65) BS01 rna ? GO:0003735 ... G1SFR8 27863242
    38 5lzt:N (3.65) BS01 rna ? GO:0002181 ... G1T0C1 27863242
    39 5lzt:N (3.65) BS02 rna ? GO:0002181 ... G1T0C1 27863242
    40 5lzt:NN (3.65) BS01 rna ? GO:0003735 ... G1SP51 27863242
    41 5lzt:O (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    42 5lzt:OO (3.65) BS01 rna ? GO:0000028 ... G1T1F0 27863242
    43 5lzt:P (3.65) BS01 peptide ? GO:0002181 ... G1SCJ6 27863242
    44 5lzt:P (3.65) BS02 rna ? GO:0002181 ... G1SCJ6 27863242
    45 5lzt:P (3.65) BS03 rna ? GO:0002181 ... G1SCJ6 27863242
    46 5lzt:PP (3.65) BS01 rna ? GO:0000028 ... G1U0Q2 27863242
    47 5lzt:Q (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    48 5lzt:QQ (3.65) BS01 rna ? GO:0000462 ... G1SGX4 27863242
    49 5lzt:R (3.65) BS01 rna N/A GO:0003723 ... N/A 27863242
    50 5lzt:R (3.65) BS02 rna N/A GO:0003723 ... N/A 27863242
    51 5lzt:RR (3.65) BS01 rna ? GO:0003735 ... G1TU13 27863242
    52 5lzt:S (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    53 5lzt:S (3.65) BS02 rna N/A GO:0003735 ... N/A 27863242
    54 5lzt:SS (3.65) BS01 rna ? GO:0003676 ... G1TPG3 27863242
    55 5lzt:T (3.65) BS01 rna ? GO:0003735 ... G1SHQ2 27863242
    56 5lzt:T (3.65) BS02 rna ? GO:0003735 ... G1SHQ2 27863242
    57 5lzt:TT (3.65) BS01 rna ? GO:0000028 ... G1TN62 27863242
    58 5lzt:U (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    59 5lzt:UU (3.65) BS01 rna ? GO:0003723 ... G1SIZ2 27863242
    60 5lzt:V (3.65) BS01 rna ? GO:0000122 ... G1T6D1 27863242
    61 5lzt:W (3.65) BS01 rna ? GO:0000027 ... G1SE28 27863242
    62 5lzt:WW (3.65) BS01 rna ? GO:0003735 ... G1TG89 27863242
    63 5lzt:X (3.65) BS01 rna ? GO:0000027 ... G1SE76 27863242
    64 5lzt:X (3.65) BS02 rna ? GO:0000027 ... G1SE76 27863242
    65 5lzt:XX (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    66 5lzt:Y (3.65) BS01 rna ? GO:0002181 ... G1SQH0 27863242
    67 5lzt:Y (3.65) BS02 rna ? GO:0002181 ... G1SQH0 27863242
    68 5lzt:YY (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    69 5lzt:Z (3.65) BS01 rna ? GO:0003735 ... G1TXF6 27863242
    70 5lzt:ZZ (3.65) BS01 rna ? GO:0003735 ... G1TDB3 27863242
    71 5lzt:a (3.65) BS01 rna ? GO:0003735 ... G1SNY0 27863242
    72 5lzt:aa (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    73 5lzt:aa (3.65) BS02 ZN N/A GO:0003735 ... N/A 27863242
    74 5lzt:b (3.65) BS01 rna ? GO:0002181 ... G1SGR6 27863242
    75 5lzt:bb (3.65) BS01 rna ? GO:0000028 ... G1TZ76 27863242
    76 5lzt:c (3.65) BS01 rna ? GO:0002181 ... G1TDL2 27863242
    77 5lzt:cc (3.65) BS01 rna ? GO:0000028 ... G1TIB4 27863242
    78 5lzt:d (3.65) BS01 rna ? GO:0002181 ... G1SHG0 27863242
    79 5lzt:dd (3.65) BS01 rna ? GO:0003735 ... G1U7M4 27863242
    80 5lzt:dd (3.65) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    81 5lzt:e (3.65) BS01 rna ? GO:0003735 ... G1TUN8 27863242
    82 5lzt:ee (3.65) BS01 rna ? GO:0003735 ... G1T8A2 27863242
    83 5lzt:f (3.65) BS01 rna ? GO:0000049 ... G1SF08 27863242
    84 5lzt:ff (3.65) BS01 rna ? GO:0003723 ... G1SK22 27863242
    85 5lzt:ff (3.65) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    86 5lzt:g (3.65) BS01 rna ? GO:0003735 ... G1TXG5 27863242
    87 5lzt:g (3.65) BS02 ZN ? GO:0003735 ... G1TXG5 27863242
    88 5lzt:gg (3.65) BS01 rna ? GO:0001891 ... G1SJB4 27863242
    89 5lzt:h (3.65) BS01 rna ? GO:0000463 ... G1SIT5 27863242
    90 5lzt:h (3.65) BS02 rna ? GO:0000463 ... G1SIT5 27863242
    91 5lzt:i (3.65) BS01 rna ? GO:0002181 ... G1TTQ5 27863242
    92 5lzt:ii (3.65) BS01 rna ? GO:0000184 ... P62495 27863242
    93 5lzt:ii (3.65) BS02 rna ? GO:0000184 ... P62495 27863242
    94 5lzt:ii (3.65) BS03 rna ? GO:0000184 ... P62495 27863242
    95 5lzt:ii (3.65) BS04 rna ? GO:0000184 ... P62495 27863242
    96 5lzt:j (3.65) BS01 rna ? GO:0003723 ... U3KPD5 27863242
    97 5lzt:j (3.65) BS02 rna ? GO:0003723 ... U3KPD5 27863242
    98 5lzt:j (3.65) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    99 5lzt:jj (3.65) BS01 rna 3.6.5.- GO:0000082 ... P15170 27863242
    100 5lzt:jj (3.65) BS02 rna 3.6.5.- GO:0000082 ... P15170 27863242
    101 5lzt:jj (3.65) BS03 MG 3.6.5.- GO:0000082 ... P15170 27863242
    102 5lzt:k (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    103 5lzt:l (3.65) BS01 rna ? GO:0003735 ... G1TTN1 27863242
    104 5lzt:l (3.65) BS02 rna ? GO:0003735 ... G1TTN1 27863242
    105 5lzt:m (3.65) BS01 rna N/A GO:0003735 ... N/A 27863242
    106 5lzt:m (3.65) BS02 ZN N/A GO:0003735 ... N/A 27863242
    107 5lzt:o (3.65) BS01 rna ? GO:0003735 ... G1T040 27863242
    108 5lzt:o (3.65) BS02 rna ? GO:0003735 ... G1T040 27863242
    109 5lzt:o (3.65) BS03 rna ? GO:0003735 ... G1T040 27863242
    110 5lzt:o (3.65) BS04 ZN ? GO:0003735 ... G1T040 27863242
    111 5lzt:p (3.65) BS01 rna ? GO:0003735 ... G1SY53 27863242
    112 5lzt:p (3.65) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    113 5lzt:r (3.65) BS01 rna ? GO:0003735 ... G1U7L1 27863242
    114 5lzt:s (3.65) BS01 rna N/A GO:0042254 ... N/A 27863242
    115 5lzt:t (3.65) BS01 rna ? GO:0003723 ... G1SMR7 27863242
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218