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BioLiP
Download all results in tab-seperated text for 106 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5jus:AA (4.2) BS01 rna ? GO:0002181 ... P0CX41 27159452
    2 5jus:AA (4.2) BS02 rna ? GO:0002181 ... P0CX41 27159452
    3 5jus:AB (4.2) BS01 rna ? GO:0000054 ... P05750 27159452
    4 5jus:AC (4.2) BS01 rna ? GO:0002181 ... P41057 27159452
    5 5jus:BA (4.2) BS01 rna ? GO:0002181 ... P04449 27159452
    6 5jus:BB (4.2) BS01 rna ? GO:0002181 ... P0CX35 27159452
    7 5jus:BC (4.2) BS01 rna ? GO:0002181 ... P0CX33 27159452
    8 5jus:CA (4.2) BS01 rna ? GO:0000027 ... P04456 27159452
    9 5jus:CA (4.2) BS02 rna ? GO:0000027 ... P04456 27159452
    10 5jus:CB (4.2) BS01 rna ? GO:0000028 ... P26783 27159452
    11 5jus:CB (4.2) BS02 rna ? GO:0000028 ... P26783 27159452
    12 5jus:CC (4.2) BS01 rna ? GO:0000028 ... P05759 27159452
    13 5jus:DA (4.2) BS01 rna ? GO:0002181 ... P05743 27159452
    14 5jus:DA (4.2) BS02 rna ? GO:0002181 ... P05743 27159452
    15 5jus:DB (4.2) BS01 rna ? GO:0000462 ... P0CX37 27159452
    16 5jus:DC (4.2) BS01 rna 3.6.5.- GO:0003746 ... P32324 27159452
    17 5jus:DC (4.2) BS02 rna 3.6.5.- GO:0003746 ... P32324 27159452
    18 5jus:DC (4.2) BS03 GDP 3.6.5.- GO:0003746 ... P32324 27159452
    19 5jus:DC (4.2) BS04 SO1 3.6.5.- GO:0003746 ... P32324 27159452
    20 5jus:E (4.2) BS01 rna ? GO:0000055 ... P0CX43 27159452
    21 5jus:E (4.2) BS02 rna ? GO:0000055 ... P0CX43 27159452
    22 5jus:EA (4.2) BS01 rna ? GO:0002181 ... P0C2H6 27159452
    23 5jus:EB (4.2) BS01 rna ? GO:0002181 ... P26786 27159452
    24 5jus:F (4.2) BS01 rna ? GO:0002181 ... P0CX45 27159452
    25 5jus:F (4.2) BS02 rna ? GO:0002181 ... P0CX45 27159452
    26 5jus:FA (4.2) BS01 rna ? GO:0002181 ... P02406 27159452
    27 5jus:FB (4.2) BS01 rna ? GO:0000462 ... P0CX39 27159452
    28 5jus:FB (4.2) BS02 rna ? GO:0000462 ... P0CX39 27159452
    29 5jus:G (4.2) BS01 rna ? GO:0000027 ... P14126 27159452
    30 5jus:GA (4.2) BS01 rna ? GO:0002181 ... P05747 27159452
    31 5jus:GB (4.2) BS01 rna ? GO:0000462 ... O13516 27159452
    32 5jus:H (4.2) BS01 rna ? GO:0002181 ... P10664 27159452
    33 5jus:H (4.2) BS02 rna ? GO:0002181 ... P10664 27159452
    34 5jus:HA (4.2) BS01 rna ? GO:0002181 ... P14120 27159452
    35 5jus:HB (4.2) BS01 rna ? GO:0000054 ... Q08745 27159452
    36 5jus:I (4.2) BS01 rna ? GO:0000027 ... P26321 27159452
    37 5jus:I (4.2) BS02 rna ? GO:0000027 ... P26321 27159452
    38 5jus:IA (4.2) BS01 rna ? GO:0002181 ... P0C2H8 27159452
    39 5jus:IB (4.2) BS01 rna ? GO:0000028 ... P0CX47 27159452
    40 5jus:J (4.2) BS01 rna ? GO:0000027 ... Q02326 27159452
    41 5jus:JA (4.2) BS01 rna ? GO:0002181 ... P38061 27159452
    42 5jus:JB (4.2) BS01 rna ? GO:0000028 ... P48589 27159452
    43 5jus:K (4.2) BS01 rna ? GO:0000463 ... P05737 27159452
    44 5jus:K (4.2) BS02 rna ? GO:0000463 ... P05737 27159452
    45 5jus:KA (4.2) BS01 rna ? GO:0000027 ... P05744 27159452
    46 5jus:KB (4.2) BS01 rna ? GO:0000462 ... P05756 27159452
    47 5jus:L (4.2) BS01 rna ? GO:0000470 ... P17076 27159452
    48 5jus:L (4.2) BS02 rna ? GO:0000470 ... P17076 27159452
    49 5jus:LA (4.2) BS01 rna ? GO:0002181 ... P87262 27159452
    50 5jus:LB (4.2) BS01 rna ? GO:0000028 ... P06367 27159452
    51 5jus:M (4.2) BS01 rna ? GO:0002181 ... P05738 27159452
    52 5jus:MA (4.2) BS01 rna ? GO:0000463 ... P0CX84 27159452
    53 5jus:MA (4.2) BS02 rna ? GO:0000463 ... P0CX84 27159452
    54 5jus:MB (4.2) BS01 rna ? GO:0000028 ... Q01855 27159452
    55 5jus:N (4.2) BS01 rna ? GO:0000027 ... P41805 27159452
    56 5jus:N (4.2) BS02 rna ? GO:0000027 ... P41805 27159452
    57 5jus:NA (4.2) BS01 rna ? GO:0002181 ... P05745 27159452
    58 5jus:NB (4.2) BS01 rna ? GO:0000462 ... P0CX51 27159452
    59 5jus:O (4.2) BS01 rna ? GO:0000027 ... P0C0W9 27159452
    60 5jus:O (4.2) BS02 rna ? GO:0000027 ... P0C0W9 27159452
    61 5jus:O (4.2) BS03 rna ? GO:0000027 ... P0C0W9 27159452
    62 5jus:OA (4.2) BS01 rna ? GO:0000448 ... P49166 27159452
    63 5jus:OA (4.2) BS02 rna ? GO:0000448 ... P49166 27159452
    64 5jus:OB (4.2) BS01 rna ? GO:0000028 ... P02407 27159452
    65 5jus:P (4.2) BS01 rna ? GO:0000027 ... P0CX53 27159452
    66 5jus:PA (4.2) BS01 rna ? GO:0002181 ... P49167 27159452
    67 5jus:PB (4.2) BS01 rna ? GO:0000054 ... P0CX55 27159452
    68 5jus:Q (4.2) BS01 rna ? GO:0002181 ... Q12690 27159452
    69 5jus:Q (4.2) BS02 rna ? GO:0002181 ... Q12690 27159452
    70 5jus:QA (4.2) BS01 rna ? GO:0002181 ... P04650 27159452
    71 5jus:QA (4.2) BS02 rna ? GO:0002181 ... P04650 27159452
    72 5jus:QB (4.2) BS01 rna ? GO:0000028 ... P07280 27159452
    73 5jus:R (4.2) BS01 rna ? GO:0000027 ... P36105 27159452
    74 5jus:RA (4.2) BS01 rna ? GO:0000027 ... P0CH08 27159452
    75 5jus:RB (4.2) BS01 rna ? GO:0000462 ... P38701 27159452
    76 5jus:S (4.2) BS01 rna ? GO:0002181 ... P05748 27159452
    77 5jus:S (4.2) BS02 rna ? GO:0002181 ... P05748 27159452
    78 5jus:T (4.2) BS01 rna ? GO:0000470 ... P26784 27159452
    79 5jus:TA (4.2) BS01 rna ? GO:0002181 ... P0CX27 27159452
    80 5jus:TB (4.2) BS01 rna ? GO:0002181 ... P0C0W1 27159452
    81 5jus:U (4.2) BS01 rna ? GO:0000448 ... P05740 27159452
    82 5jus:U (4.2) BS02 rna ? GO:0000448 ... P05740 27159452
    83 5jus:UA (4.2) BS01 rna ? GO:0002181 ... P0CX25 27159452
    84 5jus:UA (4.2) BS02 rna ? GO:0002181 ... P0CX25 27159452
    85 5jus:UB (4.2) BS01 rna ? GO:0000462 ... P0CX29 27159452
    86 5jus:V (4.2) BS01 rna ? GO:0002181 ... P0CX49 27159452
    87 5jus:VA (4.2) BS01 rna ? GO:0000027 ... P05317 27159452
    88 5jus:VB (4.2) BS01 rna ? GO:0000462 ... P0CX31 27159452
    89 5jus:W (4.2) BS01 rna ? GO:0002181 ... P0CX82 27159452
    90 5jus:W (4.2) BS02 rna ? GO:0002181 ... P0CX82 27159452
    91 5jus:WA (4.2) BS01 rna ? GO:0001965 ... P38011 27159452
    92 5jus:WB (4.2) BS01 rna ? GO:0002181 ... Q3E792 27159452
    93 5jus:WB (4.2) BS02 rna ? GO:0002181 ... Q3E792 27159452
    94 5jus:X (4.2) BS01 rna ? GO:0002181 ... P0CX23 27159452
    95 5jus:X (4.2) BS02 rna ? GO:0002181 ... P0CX23 27159452
    96 5jus:XA (4.2) BS01 rna ? GO:0000028 ... P32905 27159452
    97 5jus:XB (4.2) BS01 rna ? GO:0000054 ... P39938 27159452
    98 5jus:Y (4.2) BS01 rna ? GO:0002181 ... Q02753 27159452
    99 5jus:Y (4.2) BS02 rna ? GO:0002181 ... Q02753 27159452
    100 5jus:YA (4.2) BS01 rna ? GO:0000462 ... P33442 27159452
    101 5jus:YA (4.2) BS02 rna ? GO:0000462 ... P33442 27159452
    102 5jus:YB (4.2) BS01 rna ? GO:0000028 ... P35997 27159452
    103 5jus:Z (4.2) BS01 rna ? GO:0002181 ... P05749 27159452
    104 5jus:ZA (4.2) BS01 rna ? GO:0000054 ... P25443 27159452
    105 5jus:ZA (4.2) BS02 rna ? GO:0000054 ... P25443 27159452
    106 5jus:ZB (4.2) BS01 rna ? GO:0000028 ... Q3E7X9 27159452
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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