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BioLiP
Download all results in tab-seperated text for 289 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5fcj:m3 (3.1) BS01 rna ? GO:0002181 ... Q12690 26906928
    202 5fcj:m3 (3.1) BS02 rna ? GO:0002181 ... Q12690 26906928
    203 5fcj:m4 (3.1) BS01 rna ? GO:0000027 ... P36105 26906928
    204 5fcj:m5 (3.1) BS01 rna ? GO:0002181 ... P05748 26906928
    205 5fcj:m5 (3.1) BS02 rna ? GO:0002181 ... P05748 26906928
    206 5fcj:m5 (3.1) BS03 OHX ? GO:0002181 ... P05748 26906928
    207 5fcj:m5 (3.1) BS04 MG ? GO:0002181 ... P05748 26906928
    208 5fcj:m5 (3.1) BS05 MG ? GO:0002181 ... P05748 26906928
    209 5fcj:m6 (3.1) BS01 rna ? GO:0000470 ... P26784 26906928
    210 5fcj:m6 (3.1) BS02 MG ? GO:0000470 ... P26784 26906928
    211 5fcj:m6 (3.1) BS03 MG ? GO:0000470 ... P26784 26906928
    212 5fcj:m7 (3.1) BS01 rna ? GO:0000448 ... P05740 26906928
    213 5fcj:m7 (3.1) BS02 rna ? GO:0000448 ... P05740 26906928
    214 5fcj:m7 (3.1) BS03 MG ? GO:0000448 ... P05740 26906928
    215 5fcj:m7 (3.1) BS04 OHX ? GO:0000448 ... P05740 26906928
    216 5fcj:m8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 26906928
    217 5fcj:m8 (3.1) BS02 MG ? GO:0002181 ... P0CX49 26906928
    218 5fcj:m9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 26906928
    219 5fcj:m9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 26906928
    220 5fcj:n0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 26906928
    221 5fcj:n0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 26906928
    222 5fcj:n1 (3.1) BS01 rna ? GO:0002181 ... Q02753 26906928
    223 5fcj:n1 (3.1) BS02 rna ? GO:0002181 ... Q02753 26906928
    224 5fcj:n1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 26906928
    225 5fcj:n2 (3.1) BS01 rna ? GO:0002181 ... P05749 26906928
    226 5fcj:n3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 26906928
    227 5fcj:n3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 26906928
    228 5fcj:n3 (3.1) BS03 OHX ? GO:0002181 ... P0CX41 26906928
    229 5fcj:n4 (3.1) BS01 rna ? GO:0002181 ... P04449 26906928
    230 5fcj:n4 (3.1) BS02 rna ? GO:0002181 ... P04449 26906928
    231 5fcj:n5 (3.1) BS01 rna ? GO:0000027 ... P04456 26906928
    232 5fcj:n5 (3.1) BS02 rna ? GO:0000027 ... P04456 26906928
    233 5fcj:n6 (3.1) BS01 rna ? GO:0002181 ... P05743 26906928
    234 5fcj:n6 (3.1) BS02 rna ? GO:0002181 ... P05743 26906928
    235 5fcj:n6 (3.1) BS03 OHX ? GO:0002181 ... P05743 26906928
    236 5fcj:n7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 26906928
    237 5fcj:n8 (3.1) BS01 rna ? GO:0002181 ... P02406 26906928
    238 5fcj:n8 (3.1) BS02 MG ? GO:0002181 ... P02406 26906928
    239 5fcj:n9 (3.1) BS01 rna ? GO:0002181 ... P05747 26906928
    240 5fcj:n9 (3.1) BS02 OHX ? GO:0002181 ... P05747 26906928
    241 5fcj:o0 (3.1) BS01 rna ? GO:0002181 ... P14120 26906928
    242 5fcj:o1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 26906928
    243 5fcj:o1 (3.1) BS02 MG ? GO:0002181 ... P0C2H8 26906928
    244 5fcj:o2 (3.1) BS01 rna ? GO:0002181 ... P38061 26906928
    245 5fcj:o3 (3.1) BS01 rna ? GO:0000027 ... P05744 26906928
    246 5fcj:o3 (3.1) BS02 MG ? GO:0000027 ... P05744 26906928
    247 5fcj:o3 (3.1) BS03 OHX ? GO:0000027 ... P05744 26906928
    248 5fcj:o4 (3.1) BS01 rna ? GO:0002181 ... P87262 26906928
    249 5fcj:o4 (3.1) BS02 MG ? GO:0002181 ... P87262 26906928
    250 5fcj:o5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 26906928
    251 5fcj:o5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 26906928
    252 5fcj:o6 (3.1) BS01 rna ? GO:0002181 ... P05745 26906928
    253 5fcj:o7 (3.1) BS01 rna ? GO:0000448 ... P49166 26906928
    254 5fcj:o7 (3.1) BS02 rna ? GO:0000448 ... P49166 26906928
    255 5fcj:o7 (3.1) BS03 ZN ? GO:0000448 ... P49166 26906928
    256 5fcj:o7 (3.1) BS04 OHX ? GO:0000448 ... P49166 26906928
    257 5fcj:o8 (3.1) BS01 rna ? GO:0002181 ... P49167 26906928
    258 5fcj:o9 (3.1) BS01 rna ? GO:0002181 ... P04650 26906928
    259 5fcj:o9 (3.1) BS02 rna ? GO:0002181 ... P04650 26906928
    260 5fcj:o9 (3.1) BS03 OHX ? GO:0002181 ... P04650 26906928
    261 5fcj:p0 (3.1) BS01 rna ? GO:0000027 ... P05317 26906928
    262 5fcj:q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 26906928
    263 5fcj:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 26906928
    264 5fcj:q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 26906928
    265 5fcj:q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 26906928
    266 5fcj:q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 26906928
    267 5fcj:q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 26906928
    268 5fcj:q3 (3.1) BS02 rna ? GO:0002181 ... P0CX25 26906928
    269 5fcj:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 26906928
    270 5fcj:s0 (3.1) BS01 rna ? GO:0000028 ... P32905 26906928
    271 5fcj:s1 (3.1) BS01 rna ? GO:0000462 ... P33442 26906928
    272 5fcj:s1 (3.1) BS02 OHX ? GO:0000462 ... P33442 26906928
    273 5fcj:s2 (3.1) BS01 rna ? GO:0000054 ... P25443 26906928
    274 5fcj:s3 (3.1) BS01 rna ? GO:0000054 ... P05750 26906928
    275 5fcj:s4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 26906928
    276 5fcj:s4 (3.1) BS02 OHX ? GO:0002181 ... P0CX35 26906928
    277 5fcj:s5 (3.1) BS01 rna ? GO:0000028 ... P26783 26906928
    278 5fcj:s6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 26906928
    279 5fcj:s7 (3.1) BS01 rna ? GO:0002181 ... P26786 26906928
    280 5fcj:s8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 26906928
    281 5fcj:s8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 26906928
    282 5fcj:s8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 26906928
    283 5fcj:s9 (3.1) BS01 rna ? GO:0000462 ... O13516 26906928
    284 5fcj:s9 (3.1) BS02 OHX ? GO:0000462 ... O13516 26906928
    285 5fcj:sM (3.1) BS01 rna ? N/A P39015 26906928
    286 5fcj:sM (3.1) BS02 rna ? N/A P39015 26906928
    287 5fcj:sM (3.1) BS03 MG ? N/A P39015 26906928
    288 5fcj:sR (3.1) BS01 rna ? GO:0001965 ... P38011 26906928
    289 5fcj:sR (3.1) BS02 OHX ? GO:0001965 ... P38011 26906928
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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