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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5dzk:A (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    2 5dzk:B (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    3 5dzk:C (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    4 5dzk:D (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    5 5dzk:E (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    6 5dzk:F (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    7 5dzk:G (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    8 5dzk:H (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    9 5dzk:I (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    10 5dzk:J (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    11 5dzk:K (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    12 5dzk:L (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    13 5dzk:M (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    14 5dzk:N (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    15 5dzk:a (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    16 5dzk:b (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    17 5dzk:c (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    18 5dzk:d (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    19 5dzk:e (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    20 5dzk:f (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    21 5dzk:g (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC3 26858247
    22 5dzk:h (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    23 5dzk:i (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    24 5dzk:j (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    25 5dzk:k (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    26 5dzk:l (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    27 5dzk:m (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    28 5dzk:n (3.07) BS01 peptide 3.4.21.92 GO:0004176 ... P9WPC5 26858247
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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