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BioLiP
Download all results in tab-seperated text for 294 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5dat:l9 (3.15) BS01 rna ? GO:0002181 ... P05738 N/A
    202 5dat:m0 (3.15) BS01 rna ? GO:0000027 ... P41805 N/A
    203 5dat:m0 (3.15) BS02 rna ? GO:0000027 ... P41805 N/A
    204 5dat:m0 (3.15) BS03 MG ? GO:0000027 ... P41805 N/A
    205 5dat:m0 (3.15) BS04 OHX ? GO:0000027 ... P41805 N/A
    206 5dat:m0 (3.15) BS05 OHX ? GO:0000027 ... P41805 N/A
    207 5dat:m0 (3.15) BS06 OHX ? GO:0000027 ... P41805 N/A
    208 5dat:m1 (3.15) BS01 rna ? GO:0000027 ... Q3E757 N/A
    209 5dat:m1 (3.15) BS02 rna ? GO:0000027 ... Q3E757 N/A
    210 5dat:m2 (3.15) BS01 rna N/A N/A N/A N/A
    211 5dat:m3 (3.15) BS01 rna ? GO:0002181 ... Q12690 N/A
    212 5dat:m3 (3.15) BS02 rna ? GO:0002181 ... Q12690 N/A
    213 5dat:m4 (3.15) BS01 rna ? GO:0000027 ... P36105 N/A
    214 5dat:m5 (3.15) BS01 rna ? GO:0002181 ... P05748 N/A
    215 5dat:m5 (3.15) BS02 rna ? GO:0002181 ... P05748 N/A
    216 5dat:m5 (3.15) BS03 OHX ? GO:0002181 ... P05748 N/A
    217 5dat:m5 (3.15) BS04 MG ? GO:0002181 ... P05748 N/A
    218 5dat:m6 (3.15) BS01 rna ? GO:0000470 ... P26784 N/A
    219 5dat:m6 (3.15) BS02 MG ? GO:0000470 ... P26784 N/A
    220 5dat:m7 (3.15) BS01 rna ? GO:0000448 ... P05740 N/A
    221 5dat:m7 (3.15) BS02 rna ? GO:0000448 ... P05740 N/A
    222 5dat:m7 (3.15) BS03 MG ? GO:0000448 ... P05740 N/A
    223 5dat:m8 (3.15) BS01 rna ? GO:0002181 ... P0CX49 N/A
    224 5dat:m9 (3.15) BS01 rna ? GO:0002181 ... P0CX82 N/A
    225 5dat:m9 (3.15) BS02 rna ? GO:0002181 ... P0CX82 N/A
    226 5dat:n0 (3.15) BS01 rna ? GO:0002181 ... P0CX23 N/A
    227 5dat:n0 (3.15) BS02 rna ? GO:0002181 ... P0CX23 N/A
    228 5dat:n1 (3.15) BS01 rna ? GO:0002181 ... Q02753 N/A
    229 5dat:n1 (3.15) BS02 rna ? GO:0002181 ... Q02753 N/A
    230 5dat:n1 (3.15) BS03 MG ? GO:0002181 ... Q02753 N/A
    231 5dat:n1 (3.15) BS04 OHX ? GO:0002181 ... Q02753 N/A
    232 5dat:n2 (3.15) BS01 rna ? GO:0002181 ... P05749 N/A
    233 5dat:n3 (3.15) BS01 rna ? GO:0002181 ... P0CX41 N/A
    234 5dat:n3 (3.15) BS02 rna ? GO:0002181 ... P0CX41 N/A
    235 5dat:n4 (3.15) BS01 rna ? GO:0002181 ... P04449 N/A
    236 5dat:n4 (3.15) BS02 rna ? GO:0002181 ... P04449 N/A
    237 5dat:n5 (3.15) BS01 rna ? GO:0000027 ... P04456 N/A
    238 5dat:n5 (3.15) BS02 rna ? GO:0000027 ... P04456 N/A
    239 5dat:n6 (3.15) BS01 rna ? GO:0002181 ... P05743 N/A
    240 5dat:n6 (3.15) BS02 rna ? GO:0002181 ... P05743 N/A
    241 5dat:n7 (3.15) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    242 5dat:n8 (3.15) BS01 rna ? GO:0002181 ... P02406 N/A
    243 5dat:n9 (3.15) BS01 rna ? GO:0002181 ... P05747 N/A
    244 5dat:n9 (3.15) BS02 OHX ? GO:0002181 ... P05747 N/A
    245 5dat:o0 (3.15) BS01 rna ? GO:0002181 ... P14120 N/A
    246 5dat:o1 (3.15) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    247 5dat:o2 (3.15) BS01 rna ? GO:0002181 ... P38061 N/A
    248 5dat:o2 (3.15) BS02 MG ? GO:0002181 ... P38061 N/A
    249 5dat:o3 (3.15) BS01 rna ? GO:0000027 ... P05744 N/A
    250 5dat:o3 (3.15) BS02 MG ? GO:0000027 ... P05744 N/A
    251 5dat:o3 (3.15) BS03 OHX ? GO:0000027 ... P05744 N/A
    252 5dat:o4 (3.15) BS01 rna ? GO:0002181 ... P87262 N/A
    253 5dat:o5 (3.15) BS01 rna ? GO:0000463 ... P0CX84 N/A
    254 5dat:o5 (3.15) BS02 rna ? GO:0000463 ... P0CX84 N/A
    255 5dat:o6 (3.15) BS01 rna ? GO:0002181 ... P05745 N/A
    256 5dat:o7 (3.15) BS01 rna ? GO:0000448 ... P49166 N/A
    257 5dat:o7 (3.15) BS02 rna ? GO:0000448 ... P49166 N/A
    258 5dat:o7 (3.15) BS03 ZN ? GO:0000448 ... P49166 N/A
    259 5dat:o7 (3.15) BS04 OHX ? GO:0000448 ... P49166 N/A
    260 5dat:o8 (3.15) BS01 rna ? GO:0002181 ... P49167 N/A
    261 5dat:o9 (3.15) BS01 rna ? GO:0002181 ... P04650 N/A
    262 5dat:o9 (3.15) BS02 rna ? GO:0002181 ... P04650 N/A
    263 5dat:o9 (3.15) BS03 OHX ? GO:0002181 ... P04650 N/A
    264 5dat:p0 (3.15) BS01 rna ? N/A P05317 N/A
    265 5dat:q0 (3.15) BS01 rna ? GO:0003735 ... P0CH08 N/A
    266 5dat:q0 (3.15) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    267 5dat:q2 (3.15) BS01 rna ? GO:0002181 ... P0CX27 N/A
    268 5dat:q2 (3.15) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    269 5dat:q2 (3.15) BS03 OHX ? GO:0002181 ... P0CX27 N/A
    270 5dat:q3 (3.15) BS01 rna ? GO:0002181 ... P0CX25 N/A
    271 5dat:q3 (3.15) BS02 rna ? GO:0002181 ... P0CX25 N/A
    272 5dat:q3 (3.15) BS03 ZN ? GO:0002181 ... P0CX25 N/A
    273 5dat:s0 (3.15) BS01 rna ? GO:0000028 ... P32905 N/A
    274 5dat:s1 (3.15) BS01 rna ? GO:0000462 ... P33442 N/A
    275 5dat:s1 (3.15) BS02 rna ? GO:0000462 ... P33442 N/A
    276 5dat:s1 (3.15) BS03 OHX ? GO:0000462 ... P33442 N/A
    277 5dat:s2 (3.15) BS01 rna ? GO:0000054 ... P25443 N/A
    278 5dat:s3 (3.15) BS01 rna ? GO:0000054 ... P05750 N/A
    279 5dat:s4 (3.15) BS01 rna ? GO:0002181 ... P0CX35 N/A
    280 5dat:s4 (3.15) BS02 MG ? GO:0002181 ... P0CX35 N/A
    281 5dat:s5 (3.15) BS01 rna ? GO:0000028 ... P26783 N/A
    282 5dat:s5 (3.15) BS02 MG ? GO:0000028 ... P26783 N/A
    283 5dat:s6 (3.15) BS01 rna ? GO:0000462 ... P0CX37 N/A
    284 5dat:s7 (3.15) BS01 rna ? GO:0002181 ... P26786 N/A
    285 5dat:s8 (3.15) BS01 rna ? GO:0000462 ... P0CX39 N/A
    286 5dat:s8 (3.15) BS02 rna ? GO:0000462 ... P0CX39 N/A
    287 5dat:s8 (3.15) BS03 OHX ? GO:0000462 ... P0CX39 N/A
    288 5dat:s9 (3.15) BS01 rna ? GO:0000462 ... O13516 N/A
    289 5dat:s9 (3.15) BS02 OHX ? GO:0000462 ... O13516 N/A
    290 5dat:sM (3.15) BS01 rna ? GO:0000723 ... P39015 N/A
    291 5dat:sM (3.15) BS02 rna ? GO:0000723 ... P39015 N/A
    292 5dat:sM (3.15) BS03 MG ? GO:0000723 ... P39015 N/A
    293 5dat:sR (3.15) BS01 rna ? GO:0001965 ... P38011 N/A
    294 5dat:sR (3.15) BS02 OHX ? GO:0001965 ... P38011 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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