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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5d8p:A (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    2 5d8p:A (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    3 5d8p:A (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    4 5d8p:A (2.35) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    5 5d8p:B (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    6 5d8p:B (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    7 5d8p:B (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    8 5d8p:B (2.35) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    9 5d8p:C (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    10 5d8p:C (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    11 5d8p:C (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    12 5d8p:C (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    13 5d8p:C (2.35) BS05 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    14 5d8p:D (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    15 5d8p:D (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    16 5d8p:D (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    17 5d8p:D (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    18 5d8p:D (2.35) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    19 5d8p:D (2.35) BS06 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    20 5d8p:E (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    21 5d8p:E (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    22 5d8p:E (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    23 5d8p:E (2.35) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    24 5d8p:F (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    25 5d8p:F (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    26 5d8p:F (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    27 5d8p:F (2.35) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    28 5d8p:G (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    29 5d8p:G (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    30 5d8p:G (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    31 5d8p:G (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    32 5d8p:H (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    33 5d8p:H (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    34 5d8p:H (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    35 5d8p:H (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    36 5d8p:H (2.35) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    37 5d8p:H (2.35) BS06 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    38 5d8p:I (2.35) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    39 5d8p:I (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    40 5d8p:I (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    41 5d8p:I (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    42 5d8p:I (2.35) BS05 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    43 5d8p:J (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    44 5d8p:J (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    45 5d8p:J (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    46 5d8p:J (2.35) BS04 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    47 5d8p:K (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    48 5d8p:K (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    49 5d8p:K (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    50 5d8p:K (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    51 5d8p:K (2.35) BS05 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    52 5d8p:L (2.35) BS01 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    53 5d8p:L (2.35) BS02 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    54 5d8p:L (2.35) BS03 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    55 5d8p:L (2.35) BS04 FE2 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    56 5d8p:L (2.35) BS05 HEM 1.16.3.1 GO:0004322 ... Q9HY79 26368531
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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