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BioLiP
Download all results in tab-seperated text for 253 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5czp:YD (3.29996) BS03 MG ? GO:0002181 ... P60405 27681416
    202 5czp:YD (3.29996) BS04 MG ? GO:0002181 ... P60405 27681416
    203 5czp:YD (3.29996) BS05 MG ? GO:0002181 ... P60405 27681416
    204 5czp:YD (3.29996) BS06 MG ? GO:0002181 ... P60405 27681416
    205 5czp:YD (3.29996) BS07 MG ? GO:0002181 ... P60405 27681416
    206 5czp:YD (3.29996) BS08 MG ? GO:0002181 ... P60405 27681416
    207 5czp:YD (3.29996) BS09 MG ? GO:0002181 ... P60405 27681416
    208 5czp:YD (3.29996) BS10 MG ? GO:0002181 ... P60405 27681416
    209 5czp:YE (3.29996) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    210 5czp:YE (3.29996) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    211 5czp:YE (3.29996) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    212 5czp:YF (3.29996) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    213 5czp:YF (3.29996) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    214 5czp:YF (3.29996) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    215 5czp:YF (3.29996) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    216 5czp:YF (3.29996) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    217 5czp:YG (3.29996) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    218 5czp:YG (3.29996) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    219 5czp:YG (3.29996) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    220 5czp:YG (3.29996) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    221 5czp:YG (3.29996) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    222 5czp:YH (3.29996) BS01 rna N/A GO:0003735 ... N/A 27681416
    223 5czp:YI (3.29996) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    224 5czp:YI (3.29996) BS02 rna ? GO:0003735 ... Q5SLQ1 27681416
    225 5czp:YN (3.29996) BS01 rna ? GO:0003729 ... P60488 27681416
    226 5czp:YO (3.29996) BS01 rna ? GO:0003735 ... Q5SHP8 27681416
    227 5czp:YO (3.29996) BS02 rna ? GO:0003735 ... Q5SHP8 27681416
    228 5czp:YP (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ7 27681416
    229 5czp:YQ (3.29996) BS01 rna ? GO:0000049 ... P60489 27681416
    230 5czp:YQ (3.29996) BS02 rna ? GO:0000049 ... P60489 27681416
    231 5czp:YQ (3.29996) BS03 rna ? GO:0000049 ... P60489 27681416
    232 5czp:YQ (3.29996) BS04 MG ? GO:0000049 ... P60489 27681416
    233 5czp:YQ (3.29996) BS05 MG ? GO:0000049 ... P60489 27681416
    234 5czp:YR (3.29996) BS01 rna ? GO:0003735 ... Q9Z9H5 27681416
    235 5czp:YR (3.29996) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    236 5czp:YS (3.29996) BS01 rna ? GO:0003735 ... Q5SHQ4 27681416
    237 5czp:YS (3.29996) BS02 rna ? GO:0003735 ... Q5SHQ4 27681416
    238 5czp:YT (3.29996) BS01 rna ? GO:0003735 ... P60490 27681416
    239 5czp:YT (3.29996) BS02 rna ? GO:0003735 ... P60490 27681416
    240 5czp:YU (3.29996) BS01 rna ? GO:0000027 ... P60491 27681416
    241 5czp:YU (3.29996) BS02 MG ? GO:0000027 ... P60491 27681416
    242 5czp:YV (3.29996) BS01 rna ? GO:0003723 ... P60492 27681416
    243 5czp:YV (3.29996) BS02 MG ? GO:0003723 ... P60492 27681416
    244 5czp:YV (3.29996) BS03 MG ? GO:0003723 ... P60492 27681416
    245 5czp:YW (3.29996) BS01 rna ? GO:0003735 ... Q5SHP3 27681416
    246 5czp:YW (3.29996) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    247 5czp:YW (3.29996) BS03 MG ? GO:0003735 ... Q5SHP3 27681416
    248 5czp:YX (3.29996) BS01 rna ? GO:0000027 ... Q5SHP0 27681416
    249 5czp:YY (3.29996) BS01 rna ? GO:0003723 ... Q5SHP9 27681416
    250 5czp:YY (3.29996) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    251 5czp:YZ (3.29996) BS01 rna ? GO:0003723 ... Q5SHZ1 27681416
    252 5czp:YZ (3.29996) BS02 rna ? GO:0003723 ... Q5SHZ1 27681416
    253 5czp:YZ (3.29996) BS03 rna ? GO:0003723 ... Q5SHZ1 27681416
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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