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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5apo:A (3.41) BS01 rna ? GO:0002181 ... P0CX45 26709046
    2 5apo:B (3.41) BS01 rna ? GO:0000027 ... P14126 26709046
    3 5apo:C (3.41) BS01 rna ? GO:0002181 ... P10664 26709046
    4 5apo:C (3.41) BS02 rna ? GO:0002181 ... P10664 26709046
    5 5apo:D (3.41) BS01 rna ? GO:0000027 ... P26321 26709046
    6 5apo:D (3.41) BS02 rna ? GO:0000027 ... P26321 26709046
    7 5apo:E (3.41) BS01 rna N/A GO:0003735 ... N/A 26709046
    8 5apo:F (3.41) BS01 rna ? GO:0000463 ... P05737 26709046
    9 5apo:F (3.41) BS02 rna ? GO:0000463 ... P05737 26709046
    10 5apo:G (3.41) BS01 rna ? GO:0000470 ... P17076 26709046
    11 5apo:G (3.41) BS02 rna ? GO:0000470 ... P17076 26709046
    12 5apo:H (3.41) BS01 rna ? GO:0002181 ... P05738 26709046
    13 5apo:I (3.41) BS01 rna ? GO:0000027 ... P41805 26709046
    14 5apo:I (3.41) BS02 rna ? GO:0000027 ... P41805 26709046
    15 5apo:J (3.41) BS01 rna ? GO:0000027 ... P0C0W9 26709046
    16 5apo:J (3.41) BS02 rna ? GO:0000027 ... P0C0W9 26709046
    17 5apo:L (3.41) BS01 rna ? GO:0002181 ... Q12690 26709046
    18 5apo:L (3.41) BS02 rna ? GO:0002181 ... Q12690 26709046
    19 5apo:M (3.41) BS01 rna ? GO:0000027 ... P36105 26709046
    20 5apo:N (3.41) BS01 rna ? GO:0002181 ... P05748 26709046
    21 5apo:N (3.41) BS02 rna ? GO:0002181 ... P05748 26709046
    22 5apo:O (3.41) BS01 rna ? GO:0000470 ... P26784 26709046
    23 5apo:P (3.41) BS01 rna ? GO:0000448 ... P05740 26709046
    24 5apo:P (3.41) BS02 rna ? GO:0000448 ... P05740 26709046
    25 5apo:Q (3.41) BS01 rna ? GO:0002181 ... P0CX49 26709046
    26 5apo:R (3.41) BS01 rna ? GO:0002181 ... P0CX82 26709046
    27 5apo:S (3.41) BS01 rna ? GO:0002181 ... P0CX23 26709046
    28 5apo:S (3.41) BS02 rna ? GO:0002181 ... P0CX23 26709046
    29 5apo:T (3.41) BS01 rna ? GO:0002181 ... Q02753 26709046
    30 5apo:T (3.41) BS02 rna ? GO:0002181 ... Q02753 26709046
    31 5apo:U (3.41) BS01 rna ? GO:0002181 ... P05749 26709046
    32 5apo:V (3.41) BS01 rna ? GO:0002181 ... P0CX41 26709046
    33 5apo:W (3.41) BS01 rna ? GO:0002181 ... P04449 26709046
    34 5apo:X (3.41) BS01 rna ? GO:0000027 ... P04456 26709046
    35 5apo:X (3.41) BS02 rna ? GO:0000027 ... P04456 26709046
    36 5apo:Y (3.41) BS01 rna ? GO:0002181 ... P05743 26709046
    37 5apo:Y (3.41) BS02 rna ? GO:0002181 ... P05743 26709046
    38 5apo:Z (3.41) BS01 rna ? GO:0002181 ... P0C2H6 26709046
    39 5apo:a (3.41) BS01 rna ? GO:0002181 ... P02406 26709046
    40 5apo:b (3.41) BS01 rna ? GO:0002181 ... P05747 26709046
    41 5apo:c (3.41) BS01 rna ? GO:0002181 ... P14120 26709046
    42 5apo:d (3.41) BS01 rna ? GO:0002181 ... P0C2H8 26709046
    43 5apo:e (3.41) BS01 rna ? GO:0002181 ... P38061 26709046
    44 5apo:f (3.41) BS01 rna ? GO:0000027 ... P05744 26709046
    45 5apo:g (3.41) BS01 rna ? GO:0002181 ... P87262 26709046
    46 5apo:h (3.41) BS01 rna ? GO:0000463 ... P0CX84 26709046
    47 5apo:h (3.41) BS02 rna ? GO:0000463 ... P0CX84 26709046
    48 5apo:i (3.41) BS01 rna ? GO:0002181 ... P05745 26709046
    49 5apo:j (3.41) BS01 rna ? GO:0000448 ... P49166 26709046
    50 5apo:j (3.41) BS02 rna ? GO:0000448 ... P49166 26709046
    51 5apo:j (3.41) BS03 ZN ? GO:0000448 ... P49166 26709046
    52 5apo:k (3.41) BS01 rna ? GO:0002181 ... P49167 26709046
    53 5apo:l (3.41) BS01 rna ? GO:0002181 ... P04650 26709046
    54 5apo:l (3.41) BS02 rna ? GO:0002181 ... P04650 26709046
    55 5apo:m (3.41) BS01 rna ? GO:0000027 ... P0CH08 26709046
    56 5apo:m (3.41) BS02 ZN ? GO:0000027 ... P0CH08 26709046
    57 5apo:o (3.41) BS01 rna ? GO:0002181 ... P0CX27 26709046
    58 5apo:o (3.41) BS02 ZN ? GO:0002181 ... P0CX27 26709046
    59 5apo:p (3.41) BS01 rna ? GO:0002181 ... P0CX25 26709046
    60 5apo:p (3.41) BS02 ZN ? GO:0002181 ... P0CX25 26709046
    61 5apo:q (3.41) BS01 rna ? GO:0000027 ... P05317 26709046
    62 5apo:x (3.41) BS01 rna 3.-.-.- GO:0000055 ... Q03862 26709046
    63 5apo:x (3.41) BS02 rna 3.-.-.- GO:0000055 ... Q03862 26709046
    64 5apo:y (3.41) BS01 rna N/A GO:0003676 ... N/A 26709046
    65 5apo:y (3.41) BS02 ZN N/A GO:0003676 ... N/A 26709046
    66 5apo:y (3.41) BS03 ZN N/A GO:0003676 ... N/A 26709046
    67 5apo:z (3.41) BS01 rna N/A N/A N/A 26709046
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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