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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4yhh:B (3.417) BS01 rna ? GO:0003735 ... P80371 25753625
    2 4yhh:C (3.417) BS01 rna ? GO:0003676 ... P80372 25753625
    3 4yhh:D (3.417) BS01 rna ? GO:0003723 ... P80373 25753625
    4 4yhh:D (3.417) BS02 ZN ? GO:0003723 ... P80373 25753625
    5 4yhh:E (3.417) BS01 rna ? GO:0003723 ... Q5SHQ5 25753625
    6 4yhh:F (3.417) BS01 rna ? GO:0003735 ... Q5SLP8 25753625
    7 4yhh:G (3.417) BS01 rna ? GO:0000028 ... P17291 25753625
    8 4yhh:H (3.417) BS01 rna ? GO:0003735 ... P0DOY9 25753625
    9 4yhh:I (3.417) BS01 rna ? GO:0000049 ... P80374 25753625
    10 4yhh:J (3.417) BS01 rna ? GO:0000049 ... Q5SHN7 25753625
    11 4yhh:K (3.417) BS01 rna ? GO:0003735 ... P80376 25753625
    12 4yhh:L (3.417) BS01 rna ? GO:0000049 ... Q5SHN3 25753625
    13 4yhh:M (3.417) BS01 rna ? GO:0000049 ... P80377 25753625
    14 4yhh:N (3.417) BS01 rna ? GO:0003735 ... P0DOY6 25753625
    15 4yhh:N (3.417) BS02 ZN ? GO:0003735 ... P0DOY6 25753625
    16 4yhh:O (3.417) BS01 rna ? GO:0003735 ... Q5SJ76 25753625
    17 4yhh:P (3.417) BS01 rna ? GO:0003735 ... Q5SJH3 25753625
    18 4yhh:Q (3.417) BS01 rna ? GO:0003735 ... P0DOY7 25753625
    19 4yhh:R (3.417) BS01 rna ? GO:0003735 ... Q5SLQ0 25753625
    20 4yhh:S (3.417) BS01 rna ? GO:0003723 ... Q5SHP2 25753625
    21 4yhh:T (3.417) BS01 rna ? GO:0003723 ... P80380 25753625
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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