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BioLiP
Download all results in tab-seperated text for 219 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4wpo:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    202 4wpo:DI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    203 4wpo:DJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    204 4wpo:DK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    205 4wpo:DL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    206 4wpo:DL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25594181
    207 4wpo:DM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    208 4wpo:DN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    209 4wpo:DN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    210 4wpo:DO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    211 4wpo:DO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    212 4wpo:DP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    213 4wpo:DQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    214 4wpo:DR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    215 4wpo:DS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    216 4wpo:DT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    217 4wpo:DZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    218 4wpo:DZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    219 4wpo:DZ (2.8) BS03 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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