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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v92:BA (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    2 4v92:BB (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    3 4v92:BC (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    4 4v92:BD (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    5 4v92:BD (3.7) BS02 rna N/A GO:0003723 ... N/A 24792965
    6 4v92:BE (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    7 4v92:BF (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    8 4v92:BF (3.7) BS02 rna N/A GO:0003723 ... N/A 24792965
    9 4v92:BG (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    10 4v92:BH (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    11 4v92:BI (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    12 4v92:BJ (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    13 4v92:BK (3.7) BS01 rna N/A N/A N/A 24792965
    14 4v92:BL (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    15 4v92:BN (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    16 4v92:BO (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    17 4v92:BP (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    18 4v92:BQ (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    19 4v92:BR (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    20 4v92:BS (3.7) BS01 rna N/A GO:0003676 ... N/A 24792965
    21 4v92:BT (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    22 4v92:BU (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    23 4v92:BV (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    24 4v92:BW (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    25 4v92:BX (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    26 4v92:BY (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    27 4v92:BZ (3.7) BS01 rna N/A N/A N/A 24792965
    28 4v92:Ba (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    29 4v92:Bb (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    30 4v92:Bc (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    31 4v92:Bd (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    32 4v92:Be (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    33 4v92:Be (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    34 4v92:Bf (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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