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BioLiP
Download all results in tab-seperated text for 137 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8j:AB (3.9) BS01 rna ? GO:0003735 ... P80371 23630274
    2 4v8j:AC (3.9) BS01 rna ? GO:0003676 ... P80372 23630274
    3 4v8j:AD (3.9) BS01 rna ? GO:0003723 ... P80373 23630274
    4 4v8j:AD (3.9) BS02 ZN ? GO:0003723 ... P80373 23630274
    5 4v8j:AE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 23630274
    6 4v8j:AF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 23630274
    7 4v8j:AG (3.9) BS01 rna ? GO:0000028 ... P17291 23630274
    8 4v8j:AG (3.9) BS02 rna ? GO:0000028 ... P17291 23630274
    9 4v8j:AH (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    10 4v8j:AI (3.9) BS01 rna ? GO:0000049 ... P80374 23630274
    11 4v8j:AJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 23630274
    12 4v8j:AJ (3.9) BS02 rna ? GO:0000049 ... Q5SHN7 23630274
    13 4v8j:AK (3.9) BS01 rna ? GO:0003735 ... P80376 23630274
    14 4v8j:AL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 23630274
    15 4v8j:AM (3.9) BS01 rna ? GO:0000049 ... P80377 23630274
    16 4v8j:AM (3.9) BS02 rna ? GO:0000049 ... P80377 23630274
    17 4v8j:AM (3.9) BS03 rna ? GO:0000049 ... P80377 23630274
    18 4v8j:AM (3.9) BS04 rna ? GO:0000049 ... P80377 23630274
    19 4v8j:AN (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    20 4v8j:AN (3.9) BS02 ZN N/A GO:0003735 ... N/A 23630274
    21 4v8j:AO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 23630274
    22 4v8j:AO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 23630274
    23 4v8j:AP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 23630274
    24 4v8j:AQ (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    25 4v8j:AR (3.9) BS01 rna ? GO:0003735 ... Q5SLQ0 23630274
    26 4v8j:AS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 23630274
    27 4v8j:AT (3.9) BS01 rna ? GO:0003723 ... P80380 23630274
    28 4v8j:B0 (3.9) BS01 rna ? GO:0003735 ... P60493 23630274
    29 4v8j:B0 (3.9) BS02 rna ? GO:0003735 ... P60493 23630274
    30 4v8j:B1 (3.9) BS01 rna ? GO:0003735 ... P60494 23630274
    31 4v8j:B1 (3.9) BS02 MG ? GO:0003735 ... P60494 23630274
    32 4v8j:B2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 23630274
    33 4v8j:B3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 23630274
    34 4v8j:B3 (3.9) BS02 rna ? GO:0003735 ... Q5SHQ6 23630274
    35 4v8j:B5 (3.9) BS01 rna ? GO:0003735 ... P80339 23630274
    36 4v8j:B6 (3.9) BS01 rna ? GO:0000049 ... P35871 23630274
    37 4v8j:B7 (3.9) BS01 rna ? GO:0003735 ... P80340 23630274
    38 4v8j:B8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 23630274
    39 4v8j:B9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 23630274
    40 4v8j:BC (3.9) BS01 rna ? GO:0000049 ... Q5SLP7 23630274
    41 4v8j:BC (3.9) BS02 rna ? GO:0000049 ... Q5SLP7 23630274
    42 4v8j:BD (3.9) BS01 rna ? GO:0002181 ... P60405 23630274
    43 4v8j:BD (3.9) BS02 rna ? GO:0002181 ... P60405 23630274
    44 4v8j:BD (3.9) BS03 MG ? GO:0002181 ... P60405 23630274
    45 4v8j:BE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 23630274
    46 4v8j:BF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 23630274
    47 4v8j:BG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 23630274
    48 4v8j:BG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 23630274
    49 4v8j:BG (3.9) BS03 rna ? GO:0000049 ... Q5SHQ0 23630274
    50 4v8j:BH (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    51 4v8j:BI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 23630274
    52 4v8j:BN (3.9) BS01 rna ? GO:0003729 ... P60488 23630274
    53 4v8j:BO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 23630274
    54 4v8j:BO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 23630274
    55 4v8j:BO (3.9) BS03 MG ? GO:0003735 ... Q5SHP8 23630274
    56 4v8j:BP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 23630274
    57 4v8j:BQ (3.9) BS01 rna ? GO:0000049 ... P60489 23630274
    58 4v8j:BR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 23630274
    59 4v8j:BS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 23630274
    60 4v8j:BS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 23630274
    61 4v8j:BT (3.9) BS01 rna ? GO:0003735 ... P60490 23630274
    62 4v8j:BT (3.9) BS02 rna ? GO:0003735 ... P60490 23630274
    63 4v8j:BU (3.9) BS01 rna ? GO:0000027 ... P60491 23630274
    64 4v8j:BV (3.9) BS01 rna ? GO:0003723 ... P60492 23630274
    65 4v8j:BW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 23630274
    66 4v8j:BX (3.9) BS01 rna ? GO:0000027 ... Q5SHP0 23630274
    67 4v8j:BY (3.9) BS01 rna ? GO:0003723 ... Q5SHP9 23630274
    68 4v8j:BZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 23630274
    69 4v8j:BZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 23630274
    70 4v8j:CB (3.9) BS01 rna ? GO:0003735 ... P80371 23630274
    71 4v8j:CC (3.9) BS01 rna ? GO:0003676 ... P80372 23630274
    72 4v8j:CD (3.9) BS01 rna ? GO:0003723 ... P80373 23630274
    73 4v8j:CD (3.9) BS02 ZN ? GO:0003723 ... P80373 23630274
    74 4v8j:CE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 23630274
    75 4v8j:CF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 23630274
    76 4v8j:CG (3.9) BS01 rna ? GO:0000028 ... P17291 23630274
    77 4v8j:CG (3.9) BS02 rna ? GO:0000028 ... P17291 23630274
    78 4v8j:CG (3.9) BS03 rna ? GO:0000028 ... P17291 23630274
    79 4v8j:CH (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    80 4v8j:CI (3.9) BS01 rna ? GO:0000049 ... P80374 23630274
    81 4v8j:CI (3.9) BS02 rna ? GO:0000049 ... P80374 23630274
    82 4v8j:CJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 23630274
    83 4v8j:CK (3.9) BS01 rna ? GO:0003735 ... P80376 23630274
    84 4v8j:CL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 23630274
    85 4v8j:CM (3.9) BS01 rna ? GO:0000049 ... P80377 23630274
    86 4v8j:CM (3.9) BS02 rna ? GO:0000049 ... P80377 23630274
    87 4v8j:CM (3.9) BS03 rna ? GO:0000049 ... P80377 23630274
    88 4v8j:CN (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    89 4v8j:CN (3.9) BS02 ZN N/A GO:0003735 ... N/A 23630274
    90 4v8j:CO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 23630274
    91 4v8j:CO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 23630274
    92 4v8j:CP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 23630274
    93 4v8j:CQ (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    94 4v8j:CR (3.9) BS01 rna ? GO:0003735 ... Q5SLQ0 23630274
    95 4v8j:CS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 23630274
    96 4v8j:CT (3.9) BS01 rna ? GO:0003723 ... P80380 23630274
    97 4v8j:D0 (3.9) BS01 rna ? GO:0003735 ... P60493 23630274
    98 4v8j:D0 (3.9) BS02 rna ? GO:0003735 ... P60493 23630274
    99 4v8j:D0 (3.9) BS03 rna ? GO:0003735 ... P60493 23630274
    100 4v8j:D1 (3.9) BS01 rna ? GO:0003735 ... P60494 23630274
    101 4v8j:D2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 23630274
    102 4v8j:D3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 23630274
    103 4v8j:D3 (3.9) BS02 rna ? GO:0003735 ... Q5SHQ6 23630274
    104 4v8j:D5 (3.9) BS01 rna ? GO:0003735 ... P80339 23630274
    105 4v8j:D6 (3.9) BS01 rna ? GO:0000049 ... P35871 23630274
    106 4v8j:D7 (3.9) BS01 rna ? GO:0003735 ... P80340 23630274
    107 4v8j:D8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 23630274
    108 4v8j:D9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 23630274
    109 4v8j:DC (3.9) BS01 rna ? GO:0000049 ... Q5SLP7 23630274
    110 4v8j:DD (3.9) BS01 rna ? GO:0002181 ... P60405 23630274
    111 4v8j:DD (3.9) BS02 MG ? GO:0002181 ... P60405 23630274
    112 4v8j:DE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 23630274
    113 4v8j:DF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 23630274
    114 4v8j:DG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 23630274
    115 4v8j:DG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 23630274
    116 4v8j:DG (3.9) BS03 rna ? GO:0000049 ... Q5SHQ0 23630274
    117 4v8j:DH (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    118 4v8j:DI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 23630274
    119 4v8j:DI (3.9) BS02 rna ? GO:0003735 ... Q5SLQ1 23630274
    120 4v8j:DN (3.9) BS01 rna ? GO:0003729 ... P60488 23630274
    121 4v8j:DO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 23630274
    122 4v8j:DO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 23630274
    123 4v8j:DP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 23630274
    124 4v8j:DQ (3.9) BS01 rna ? GO:0000049 ... P60489 23630274
    125 4v8j:DQ (3.9) BS02 rna ? GO:0000049 ... P60489 23630274
    126 4v8j:DR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 23630274
    127 4v8j:DS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 23630274
    128 4v8j:DS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 23630274
    129 4v8j:DT (3.9) BS01 rna ? GO:0003735 ... P60490 23630274
    130 4v8j:DT (3.9) BS02 rna ? GO:0003735 ... P60490 23630274
    131 4v8j:DU (3.9) BS01 rna ? GO:0000027 ... P60491 23630274
    132 4v8j:DV (3.9) BS01 rna ? GO:0003723 ... P60492 23630274
    133 4v8j:DW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 23630274
    134 4v8j:DX (3.9) BS01 rna ? GO:0000027 ... Q5SHP0 23630274
    135 4v8j:DY (3.9) BS01 rna ? GO:0003723 ... Q5SHP9 23630274
    136 4v8j:DZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 23630274
    137 4v8j:DZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 23630274

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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