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BioLiP
Download all results in tab-seperated text for 135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8c:A0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    2 4v8c:A1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    3 4v8c:A2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    4 4v8c:A3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501
    5 4v8c:A3 (3.3) BS02 rna ? GO:0003735 ... P60493 22437501
    6 4v8c:A4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    7 4v8c:A5 (3.3) BS01 rna ? GO:0003735 ... P80339 22437501
    8 4v8c:A6 (3.3) BS01 rna ? GO:0000049 ... P35871 22437501
    9 4v8c:A7 (3.3) BS01 rna ? GO:0003735 ... P80340 22437501
    10 4v8c:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    11 4v8c:AD (3.3) BS01 rna ? GO:0002181 ... P60405 22437501
    12 4v8c:AE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    13 4v8c:AE (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    14 4v8c:AF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    15 4v8c:AF (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 22437501
    16 4v8c:AF (3.3) BS03 MG ? GO:0003735 ... Q5SHN9 22437501
    17 4v8c:AG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    18 4v8c:AG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    19 4v8c:AG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    20 4v8c:AH (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    21 4v8c:AK (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    22 4v8c:AM (3.3) BS01 rna ? GO:0003729 ... P60488 22437501
    23 4v8c:AN (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    24 4v8c:AN (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    25 4v8c:AO (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    26 4v8c:AP (3.3) BS01 rna ? GO:0000049 ... P60489 22437501
    27 4v8c:AP (3.3) BS02 rna ? GO:0000049 ... P60489 22437501
    28 4v8c:AP (3.3) BS03 rna ? GO:0000049 ... P60489 22437501
    29 4v8c:AQ (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    30 4v8c:AQ (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    31 4v8c:AR (3.3) BS01 rna ? GO:0003735 ... P60490 22437501
    32 4v8c:AR (3.3) BS02 rna ? GO:0003735 ... P60490 22437501
    33 4v8c:AS (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    34 4v8c:AT (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    35 4v8c:AU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    36 4v8c:AV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    37 4v8c:AW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    38 4v8c:AX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    39 4v8c:AX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    40 4v8c:AZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    41 4v8c:B0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    42 4v8c:B1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    43 4v8c:B2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    44 4v8c:B3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501
    45 4v8c:B3 (3.3) BS02 rna ? GO:0003735 ... P60493 22437501
    46 4v8c:B4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    47 4v8c:B5 (3.3) BS01 rna ? GO:0003735 ... P80339 22437501
    48 4v8c:B6 (3.3) BS01 rna ? GO:0000049 ... P35871 22437501
    49 4v8c:B7 (3.3) BS01 rna ? GO:0003735 ... P80340 22437501
    50 4v8c:B8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    51 4v8c:BD (3.3) BS01 rna ? GO:0002181 ... P60405 22437501
    52 4v8c:BD (3.3) BS02 rna ? GO:0002181 ... P60405 22437501
    53 4v8c:BD (3.3) BS03 MG ? GO:0002181 ... P60405 22437501
    54 4v8c:BE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    55 4v8c:BF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    56 4v8c:BG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    57 4v8c:BG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    58 4v8c:BG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    59 4v8c:BH (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    60 4v8c:BK (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    61 4v8c:BK (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    62 4v8c:BM (3.3) BS01 rna ? GO:0003729 ... P60488 22437501
    63 4v8c:BN (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    64 4v8c:BN (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    65 4v8c:BO (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    66 4v8c:BP (3.3) BS01 rna ? GO:0000049 ... P60489 22437501
    67 4v8c:BP (3.3) BS02 rna ? GO:0000049 ... P60489 22437501
    68 4v8c:BP (3.3) BS03 rna ? GO:0000049 ... P60489 22437501
    69 4v8c:BQ (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    70 4v8c:BQ (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    71 4v8c:BR (3.3) BS01 rna ? GO:0003735 ... P60490 22437501
    72 4v8c:BR (3.3) BS02 rna ? GO:0003735 ... P60490 22437501
    73 4v8c:BS (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    74 4v8c:BT (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    75 4v8c:BU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    76 4v8c:BV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    77 4v8c:BV (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    78 4v8c:BW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    79 4v8c:BX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    80 4v8c:BX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    81 4v8c:BZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    82 4v8c:CE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    83 4v8c:CF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    84 4v8c:CG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    85 4v8c:CG (3.3) BS02 ZN ? GO:0003723 ... P80373 22437501
    86 4v8c:CH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    87 4v8c:CI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    88 4v8c:CJ (3.3) BS01 rna ? GO:0000028 ... P17291 22437501
    89 4v8c:CJ (3.3) BS02 rna ? GO:0000028 ... P17291 22437501
    90 4v8c:CK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    91 4v8c:CL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    92 4v8c:CL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    93 4v8c:CM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    94 4v8c:CN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    95 4v8c:CN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    96 4v8c:CO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    97 4v8c:CO (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    98 4v8c:CP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    99 4v8c:CQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    100 4v8c:CQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    101 4v8c:CR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    102 4v8c:CR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    103 4v8c:CS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    104 4v8c:CT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    105 4v8c:CU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    106 4v8c:CV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    107 4v8c:CW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    108 4v8c:DE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    109 4v8c:DF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    110 4v8c:DG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    111 4v8c:DG (3.3) BS02 MG ? GO:0003723 ... P80373 22437501
    112 4v8c:DG (3.3) BS03 ZN ? GO:0003723 ... P80373 22437501
    113 4v8c:DH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    114 4v8c:DI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    115 4v8c:DJ (3.3) BS01 rna ? GO:0000028 ... P17291 22437501
    116 4v8c:DJ (3.3) BS02 rna ? GO:0000028 ... P17291 22437501
    117 4v8c:DK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    118 4v8c:DL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    119 4v8c:DL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    120 4v8c:DM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    121 4v8c:DN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    122 4v8c:DN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    123 4v8c:DO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    124 4v8c:DO (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    125 4v8c:DP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    126 4v8c:DP (3.3) BS02 rna ? GO:0000049 ... P80377 22437501
    127 4v8c:DQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    128 4v8c:DQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    129 4v8c:DR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    130 4v8c:DR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    131 4v8c:DS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    132 4v8c:DT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    133 4v8c:DU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    134 4v8c:DV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    135 4v8c:DW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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