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BioLiP
Download all results in tab-seperated text for 352 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4v6f:D0 (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 20400952
    202 4v6f:D0 (3.1) BS03 MG ? GO:0003735 ... Q9Z9H5 20400952
    203 4v6f:D0 (3.1) BS04 MG ? GO:0003735 ... Q9Z9H5 20400952
    204 4v6f:D0 (3.1) BS05 MG ? GO:0003735 ... Q9Z9H5 20400952
    205 4v6f:D1 (3.1) BS01 rna ? GO:0000027 ... P60491 20400952
    206 4v6f:D1 (3.1) BS02 MG ? GO:0000027 ... P60491 20400952
    207 4v6f:D1 (3.1) BS03 MG ? GO:0000027 ... P60491 20400952
    208 4v6f:D1 (3.1) BS04 MG ? GO:0000027 ... P60491 20400952
    209 4v6f:D1 (3.1) BS05 MG ? GO:0000027 ... P60491 20400952
    210 4v6f:D1 (3.1) BS06 MG ? GO:0000027 ... P60491 20400952
    211 4v6f:D1 (3.1) BS07 MG ? GO:0000027 ... P60491 20400952
    212 4v6f:D1 (3.1) BS08 MG ? GO:0000027 ... P60491 20400952
    213 4v6f:D1 (3.1) BS09 MG ? GO:0000027 ... P60491 20400952
    214 4v6f:D1 (3.1) BS10 MG ? GO:0000027 ... P60491 20400952
    215 4v6f:D2 (3.1) BS01 rna ? GO:0003723 ... P60492 20400952
    216 4v6f:D2 (3.1) BS02 MG ? GO:0003723 ... P60492 20400952
    217 4v6f:D2 (3.1) BS03 MG ? GO:0003723 ... P60492 20400952
    218 4v6f:D2 (3.1) BS04 MG ? GO:0003723 ... P60492 20400952
    219 4v6f:D3 (3.1) BS01 rna ? GO:0003735 ... P60493 20400952
    220 4v6f:D3 (3.1) BS02 rna ? GO:0003735 ... P60493 20400952
    221 4v6f:D3 (3.1) BS03 rna ? GO:0003735 ... P60493 20400952
    222 4v6f:D3 (3.1) BS04 MG ? GO:0003735 ... P60493 20400952
    223 4v6f:D3 (3.1) BS05 MG ? GO:0003735 ... P60493 20400952
    224 4v6f:D3 (3.1) BS06 MG ? GO:0003735 ... P60493 20400952
    225 4v6f:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 20400952
    226 4v6f:D4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 20400952
    227 4v6f:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 20400952
    228 4v6f:D5 (3.1) BS02 MG ? GO:0003735 ... P80339 20400952
    229 4v6f:D5 (3.1) BS03 MG ? GO:0003735 ... P80339 20400952
    230 4v6f:D5 (3.1) BS04 MG ? GO:0003735 ... P80339 20400952
    231 4v6f:D5 (3.1) BS05 MG ? GO:0003735 ... P80339 20400952
    232 4v6f:D5 (3.1) BS06 MG ? GO:0003735 ... P80339 20400952
    233 4v6f:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 20400952
    234 4v6f:D6 (3.1) BS02 MG ? GO:0000049 ... P35871 20400952
    235 4v6f:D6 (3.1) BS03 MG ? GO:0000049 ... P35871 20400952
    236 4v6f:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 20400952
    237 4v6f:D7 (3.1) BS02 MG ? GO:0003735 ... P80340 20400952
    238 4v6f:D7 (3.1) BS03 MG ? GO:0003735 ... P80340 20400952
    239 4v6f:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 20400952
    240 4v6f:D8 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 20400952
    241 4v6f:D8 (3.1) BS03 MG ? GO:0003735 ... Q5SKU1 20400952
    242 4v6f:D8 (3.1) BS04 MG ? GO:0003735 ... Q5SKU1 20400952
    243 4v6f:DD (3.1) BS01 rna ? GO:0002181 ... P60405 20400952
    244 4v6f:DD (3.1) BS02 MG ? GO:0002181 ... P60405 20400952
    245 4v6f:DD (3.1) BS03 MG ? GO:0002181 ... P60405 20400952
    246 4v6f:DD (3.1) BS04 MG ? GO:0002181 ... P60405 20400952
    247 4v6f:DD (3.1) BS05 MG ? GO:0002181 ... P60405 20400952
    248 4v6f:DD (3.1) BS06 MG ? GO:0002181 ... P60405 20400952
    249 4v6f:DD (3.1) BS07 MG ? GO:0002181 ... P60405 20400952
    250 4v6f:DD (3.1) BS08 MG ? GO:0002181 ... P60405 20400952
    251 4v6f:DD (3.1) BS09 MG ? GO:0002181 ... P60405 20400952
    252 4v6f:DD (3.1) BS10 MG ? GO:0002181 ... P60405 20400952
    253 4v6f:DD (3.1) BS11 MG ? GO:0002181 ... P60405 20400952
    254 4v6f:DD (3.1) BS12 MG ? GO:0002181 ... P60405 20400952
    255 4v6f:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 20400952
    256 4v6f:DE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 20400952
    257 4v6f:DE (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 20400952
    258 4v6f:DE (3.1) BS04 MG ? GO:0003735 ... Q5SHN8 20400952
    259 4v6f:DE (3.1) BS05 MG ? GO:0003735 ... Q5SHN8 20400952
    260 4v6f:DE (3.1) BS06 MG ? GO:0003735 ... Q5SHN8 20400952
    261 4v6f:DE (3.1) BS07 MG ? GO:0003735 ... Q5SHN8 20400952
    262 4v6f:DE (3.1) BS08 MG ? GO:0003735 ... Q5SHN8 20400952
    263 4v6f:DE (3.1) BS09 MG ? GO:0003735 ... Q5SHN8 20400952
    264 4v6f:DE (3.1) BS10 MG ? GO:0003735 ... Q5SHN8 20400952
    265 4v6f:DE (3.1) BS11 MG ? GO:0003735 ... Q5SHN8 20400952
    266 4v6f:DE (3.1) BS12 MG ? GO:0003735 ... Q5SHN8 20400952
    267 4v6f:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 20400952
    268 4v6f:DF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 20400952
    269 4v6f:DF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 20400952
    270 4v6f:DF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 20400952
    271 4v6f:DF (3.1) BS05 MG ? GO:0003735 ... Q5SHN9 20400952
    272 4v6f:DF (3.1) BS06 MG ? GO:0003735 ... Q5SHN9 20400952
    273 4v6f:DF (3.1) BS07 MG ? GO:0003735 ... Q5SHN9 20400952
    274 4v6f:DF (3.1) BS08 MG ? GO:0003735 ... Q5SHN9 20400952
    275 4v6f:DF (3.1) BS09 MG ? GO:0003735 ... Q5SHN9 20400952
    276 4v6f:DF (3.1) BS10 MG ? GO:0003735 ... Q5SHN9 20400952
    277 4v6f:DF (3.1) BS11 MG ? GO:0003735 ... Q5SHN9 20400952
    278 4v6f:DF (3.1) BS12 MG ? GO:0003735 ... Q5SHN9 20400952
    279 4v6f:DF (3.1) BS13 MG ? GO:0003735 ... Q5SHN9 20400952
    280 4v6f:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 20400952
    281 4v6f:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 20400952
    282 4v6f:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 20400952
    283 4v6f:DG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 20400952
    284 4v6f:DG (3.1) BS05 MG ? GO:0000049 ... Q5SHQ0 20400952
    285 4v6f:DH (3.1) BS01 rna ? GO:0002181 ... A0A0M9ADP1 20400952
    286 4v6f:DH (3.1) BS02 MG ? GO:0002181 ... A0A0M9ADP1 20400952
    287 4v6f:DH (3.1) BS03 MG ? GO:0002181 ... A0A0M9ADP1 20400952
    288 4v6f:DK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 20400952
    289 4v6f:DK (3.1) BS02 MG ? GO:0003735 ... Q5SLQ1 20400952
    290 4v6f:DK (3.1) BS03 MG ? GO:0003735 ... Q5SLQ1 20400952
    291 4v6f:DL (3.1) BS01 rna ? GO:0003735 ... Q5SLP6 20400952
    292 4v6f:DM (3.1) BS01 rna ? GO:0003729 ... P60488 20400952
    293 4v6f:DM (3.1) BS02 MG ? GO:0003729 ... P60488 20400952
    294 4v6f:DM (3.1) BS03 MG ? GO:0003729 ... P60488 20400952
    295 4v6f:DM (3.1) BS04 MG ? GO:0003729 ... P60488 20400952
    296 4v6f:DM (3.1) BS05 MG ? GO:0003729 ... P60488 20400952
    297 4v6f:DN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 20400952
    298 4v6f:DN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 20400952
    299 4v6f:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 20400952
    300 4v6f:DO (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 20400952
    301 4v6f:DO (3.1) BS03 MG ? GO:0003735 ... Q5SHQ7 20400952
    302 4v6f:DO (3.1) BS04 MG ? GO:0003735 ... Q5SHQ7 20400952
    303 4v6f:DO (3.1) BS05 MG ? GO:0003735 ... Q5SHQ7 20400952
    304 4v6f:DO (3.1) BS06 MG ? GO:0003735 ... Q5SHQ7 20400952
    305 4v6f:DO (3.1) BS07 MG ? GO:0003735 ... Q5SHQ7 20400952
    306 4v6f:DO (3.1) BS08 MG ? GO:0003735 ... Q5SHQ7 20400952
    307 4v6f:DO (3.1) BS09 MG ? GO:0003735 ... Q5SHQ7 20400952
    308 4v6f:DO (3.1) BS10 MG ? GO:0003735 ... Q5SHQ7 20400952
    309 4v6f:DP (3.1) BS01 rna ? GO:0000049 ... P60489 20400952
    310 4v6f:DP (3.1) BS02 rna ? GO:0000049 ... P60489 20400952
    311 4v6f:DP (3.1) BS03 rna ? GO:0000049 ... P60489 20400952
    312 4v6f:DP (3.1) BS04 MG ? GO:0000049 ... P60489 20400952
    313 4v6f:DP (3.1) BS05 MG ? GO:0000049 ... P60489 20400952
    314 4v6f:DP (3.1) BS06 MG ? GO:0000049 ... P60489 20400952
    315 4v6f:DP (3.1) BS07 MG ? GO:0000049 ... P60489 20400952
    316 4v6f:DQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 20400952
    317 4v6f:DQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 20400952
    318 4v6f:DR (3.1) BS01 rna ? GO:0003735 ... P60490 20400952
    319 4v6f:DR (3.1) BS02 rna ? GO:0003735 ... P60490 20400952
    320 4v6f:DR (3.1) BS03 MG ? GO:0003735 ... P60490 20400952
    321 4v6f:DR (3.1) BS04 MG ? GO:0003735 ... P60490 20400952
    322 4v6f:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 20400952
    323 4v6f:DS (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 20400952
    324 4v6f:DS (3.1) BS03 MG ? GO:0003735 ... Q5SHP3 20400952
    325 4v6f:DT (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 20400952
    326 4v6f:DT (3.1) BS02 MG ? GO:0000027 ... Q5SHP0 20400952
    327 4v6f:DT (3.1) BS03 MG ? GO:0000027 ... Q5SHP0 20400952
    328 4v6f:DT (3.1) BS04 MG ? GO:0000027 ... Q5SHP0 20400952
    329 4v6f:DT (3.1) BS05 MG ? GO:0000027 ... Q5SHP0 20400952
    330 4v6f:DT (3.1) BS06 MG ? GO:0000027 ... Q5SHP0 20400952
    331 4v6f:DU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 20400952
    332 4v6f:DU (3.1) BS02 MG ? GO:0003723 ... Q5SHP9 20400952
    333 4v6f:DU (3.1) BS03 MG ? GO:0003723 ... Q5SHP9 20400952
    334 4v6f:DU (3.1) BS04 MG ? GO:0003723 ... Q5SHP9 20400952
    335 4v6f:DU (3.1) BS05 MG ? GO:0003723 ... Q5SHP9 20400952
    336 4v6f:DU (3.1) BS06 MG ? GO:0003723 ... Q5SHP9 20400952
    337 4v6f:DU (3.1) BS07 MG ? GO:0003723 ... Q5SHP9 20400952
    338 4v6f:DU (3.1) BS08 MG ? GO:0003723 ... Q5SHP9 20400952
    339 4v6f:DV (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 20400952
    340 4v6f:DV (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 20400952
    341 4v6f:DV (3.1) BS03 MG ? GO:0003723 ... Q5SHZ1 20400952
    342 4v6f:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 20400952
    343 4v6f:DW (3.1) BS02 MG ? GO:0003735 ... Q5SHP6 20400952
    344 4v6f:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 20400952
    345 4v6f:DX (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 20400952
    346 4v6f:DX (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 20400952
    347 4v6f:DY (3.1) BS01 rna ? GO:0003735 ... Q8VVE3 20400952
    348 4v6f:DY (3.1) BS02 MG ? GO:0003735 ... Q8VVE3 20400952
    349 4v6f:DY (3.1) BS03 MG ? GO:0003735 ... Q8VVE3 20400952
    350 4v6f:DZ (3.1) BS01 rna ? GO:0003735 ... P60494 20400952
    351 4v6f:DZ (3.1) BS02 MG ? GO:0003735 ... P60494 20400952
    352 4v6f:DZ (3.1) BS03 MG ? GO:0003735 ... P60494 20400952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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